miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 93164 1.07 0.001325
Target:  5'- cCGCGGAGAACCAAGGCCCCAGCGCCGc -3'
miRNA:   3'- -GCGCCUCUUGGUUCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 15869 0.7 0.439776
Target:  5'- uCGaGGAGGcuccgcaGCCugcGGCCUCAGCGCCa -3'
miRNA:   3'- -GCgCCUCU-------UGGuu-CCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 121861 0.7 0.458172
Target:  5'- gGCGGAGGGCCGGucGCgCUcGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUc-CGgGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 157424 0.65 0.721882
Target:  5'- aCGCcGAGAcagaugccgcguacGCCcugcuGGCCCCuggcaagcaaucgAGCGCCGg -3'
miRNA:   3'- -GCGcCUCU--------------UGGuu---CCGGGG-------------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 136655 0.75 0.235096
Target:  5'- aGUGGGGcGCCAAcGGCCCCgccgacAGUGCCGc -3'
miRNA:   3'- gCGCCUCuUGGUU-CCGGGG------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 149471 0.74 0.257837
Target:  5'- uCG-GGGGAGCCGcGGGCCCCGGCucgGCCc -3'
miRNA:   3'- -GCgCCUCUUGGU-UCCGGGGUCG---CGGc -5'
24652 5' -61.4 NC_005264.1 + 126116 0.74 0.263196
Target:  5'- uGCGGGGAACUGAGGUuucgguuUCCAacGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUCCG-------GGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 50278 0.74 0.263797
Target:  5'- cCGCGGAGAucACCAAcGCCCUauuucGGCgGCCGg -3'
miRNA:   3'- -GCGCCUCU--UGGUUcCGGGG-----UCG-CGGC- -5'
24652 5' -61.4 NC_005264.1 + 98763 0.72 0.374566
Target:  5'- gCGCGaGAGAACCcacAGGCCgagaCCuGCGCCu -3'
miRNA:   3'- -GCGC-CUCUUGGu--UCCGG----GGuCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 128870 0.71 0.4235
Target:  5'- uCGCGaGAGggUCAAgcGGCCCCuaucgGGCGCgGu -3'
miRNA:   3'- -GCGC-CUCuuGGUU--CCGGGG-----UCGCGgC- -5'
24652 5' -61.4 NC_005264.1 + 105581 0.72 0.374566
Target:  5'- cCGCGG---GCUAGGGCUCgAGCGCCu -3'
miRNA:   3'- -GCGCCucuUGGUUCCGGGgUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 93258 0.72 0.33464
Target:  5'- aGCGGgcuAGGuggcGCCAGGGCCCCGGCuucaguggaggaauGCCu -3'
miRNA:   3'- gCGCC---UCU----UGGUUCCGGGGUCG--------------CGGc -5'
24652 5' -61.4 NC_005264.1 + 112988 0.86 0.042738
Target:  5'- gCGCGGcGucACCAGGGCCCCGGUGCCGu -3'
miRNA:   3'- -GCGCCuCu-UGGUUCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 137209 0.71 0.382452
Target:  5'- aCGCGGAGcGC---GGCCCCAcCGCCGc -3'
miRNA:   3'- -GCGCCUCuUGguuCCGGGGUcGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 159069 0.79 0.128515
Target:  5'- gGCGGucGACCAAgGGCCCgCAGCGCCc -3'
miRNA:   3'- gCGCCucUUGGUU-CCGGG-GUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 133193 0.73 0.301245
Target:  5'- aCGCGGcGGACCGacugcGGGCCUCGuucguccGCGCCGu -3'
miRNA:   3'- -GCGCCuCUUGGU-----UCCGGGGU-------CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 3831 0.71 0.413408
Target:  5'- gCGCGGAG-ACCugcuccuggcauGGGUCCU-GCGCCGg -3'
miRNA:   3'- -GCGCCUCuUGGu-----------UCCGGGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 37650 0.7 0.440642
Target:  5'- gGCGGAG-AUgAAGGCUUCGGuUGCCGg -3'
miRNA:   3'- gCGCCUCuUGgUUCCGGGGUC-GCGGC- -5'
24652 5' -61.4 NC_005264.1 + 13579 0.79 0.138447
Target:  5'- uCGCuGGcaaAGGGCUucGGCCCCAGCGCCa -3'
miRNA:   3'- -GCG-CC---UCUUGGuuCCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 7376 0.74 0.260208
Target:  5'- cCGCGGuuuucauuucuucGAUCGcGGCCCCGGCGCCGu -3'
miRNA:   3'- -GCGCCuc-----------UUGGUuCCGGGGUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.