miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24653 3' -55.5 NC_005264.1 + 78473 0.66 0.90253
Target:  5'- uGGUGGuugcucacauuauAGGAuacGCCUCGAcGGUGUUGg -3'
miRNA:   3'- gUCACC-------------UCCUua-CGGAGUU-CCGCGAC- -5'
24653 3' -55.5 NC_005264.1 + 16379 0.66 0.896683
Target:  5'- uGGgggGGAgGGGAUGCC-CGuGGCGCa- -3'
miRNA:   3'- gUCa--CCU-CCUUACGGaGUuCCGCGac -5'
24653 3' -55.5 NC_005264.1 + 124117 0.68 0.835852
Target:  5'- cCGG-GGAGGggUccucuacGCCUgGGGGCgaGCUGg -3'
miRNA:   3'- -GUCaCCUCCuuA-------CGGAgUUCCG--CGAC- -5'
24653 3' -55.5 NC_005264.1 + 5090 0.68 0.835852
Target:  5'- cCGG-GGAGGggUccucuacGCCUgGGGGCgaGCUGg -3'
miRNA:   3'- -GUCaCCUCCuuA-------CGGAgUUCCG--CGAC- -5'
24653 3' -55.5 NC_005264.1 + 26059 0.68 0.819648
Target:  5'- aGGUGGuGGccguguGUGCCUagcccGGCGCUGu -3'
miRNA:   3'- gUCACCuCCu-----UACGGAguu--CCGCGAC- -5'
24653 3' -55.5 NC_005264.1 + 32345 0.69 0.792804
Target:  5'- gAGUGcuucGGGGggUGCUUCGGGGCuguuCUGg -3'
miRNA:   3'- gUCAC----CUCCuuACGGAGUUCCGc---GAC- -5'
24653 3' -55.5 NC_005264.1 + 151372 0.69 0.792804
Target:  5'- gAGUGcuucGGGGggUGCUUCGGGGCuguuCUGg -3'
miRNA:   3'- gUCAC----CUCCuuACGGAGUUCCGc---GAC- -5'
24653 3' -55.5 NC_005264.1 + 53070 0.69 0.773203
Target:  5'- aGGUGGccgcggacccagcGGGAGUGUCUaagcugguggaCAAGGCGCUc -3'
miRNA:   3'- gUCACC-------------UCCUUACGGA-----------GUUCCGCGAc -5'
24653 3' -55.5 NC_005264.1 + 139489 0.7 0.744238
Target:  5'- --cUGGAGaGAAUcGCCUCGGGGCagaccccGCUGg -3'
miRNA:   3'- gucACCUC-CUUA-CGGAGUUCCG-------CGAC- -5'
24653 3' -55.5 NC_005264.1 + 93288 1.07 0.003793
Target:  5'- uCAGUGGAGGAAUGCCUCAAGGCGCUGu -3'
miRNA:   3'- -GUCACCUCCUUACGGAGUUCCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.