miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24653 5' -63.1 NC_005264.1 + 40408 0.66 0.59967
Target:  5'- cGUCCcucCCCCGcGCACcgaCCCCGCGu- -3'
miRNA:   3'- -UAGGcu-GGGGC-CGUGag-GGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 33859 0.66 0.59967
Target:  5'- --aCGGgUCCGGCAgUCCCUCGCc-- -3'
miRNA:   3'- uagGCUgGGGCCGUgAGGGGGCGuua -5'
24653 5' -63.1 NC_005264.1 + 87745 0.66 0.59967
Target:  5'- -cUCGGCgCCGGCGC-CUgCCGCAGc -3'
miRNA:   3'- uaGGCUGgGGCCGUGaGGgGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 26609 0.66 0.59967
Target:  5'- uGUCCGucgccACCUCGGCcCUCCCguuacUCGCAAc -3'
miRNA:   3'- -UAGGC-----UGGGGCCGuGAGGG-----GGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 152885 0.66 0.59967
Target:  5'- --aCGGgUCCGGCAgUCCCUCGCc-- -3'
miRNA:   3'- uagGCUgGGGCCGUgAGGGGGCGuua -5'
24653 5' -63.1 NC_005264.1 + 159435 0.66 0.59967
Target:  5'- cGUCCcucCCCCGcGCACcgaCCCCGCGu- -3'
miRNA:   3'- -UAGGcu-GGGGC-CGUGag-GGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 33815 0.66 0.5801
Target:  5'- -aCCGGCUcgCCGGCAaggcuguagcuaUUCCCCUGCGc- -3'
miRNA:   3'- uaGGCUGG--GGCCGU------------GAGGGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 64989 0.66 0.5801
Target:  5'- uUCCG-CUgCGGCGCUCUacguagUCCGCGAUg -3'
miRNA:   3'- uAGGCuGGgGCCGUGAGG------GGGCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 150078 0.66 0.5801
Target:  5'- -gUUGugCCCGGCGCUgCCCCa---- -3'
miRNA:   3'- uaGGCugGGGCCGUGAgGGGGcguua -5'
24653 5' -63.1 NC_005264.1 + 146336 0.66 0.570364
Target:  5'- cAUCCGucuGCgCCGGCGugcCUCgaCCCCGCAGg -3'
miRNA:   3'- -UAGGC---UGgGGCCGU---GAG--GGGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 90717 0.66 0.560669
Target:  5'- uAUCCGGCaggCGGCGCUCCCUCa---- -3'
miRNA:   3'- -UAGGCUGgg-GCCGUGAGGGGGcguua -5'
24653 5' -63.1 NC_005264.1 + 114213 0.66 0.551019
Target:  5'- -aCCGACgCCGGCuugcccacCUCCCCgGCc-- -3'
miRNA:   3'- uaGGCUGgGGCCGu-------GAGGGGgCGuua -5'
24653 5' -63.1 NC_005264.1 + 68969 0.66 0.551019
Target:  5'- -gCCGGCCUgccaCGGCACgacuaCCCgCCGCAu- -3'
miRNA:   3'- uaGGCUGGG----GCCGUGa----GGG-GGCGUua -5'
24653 5' -63.1 NC_005264.1 + 42617 0.67 0.541421
Target:  5'- -aCCGGCCCCGGCGCUUCg--GUAAa -3'
miRNA:   3'- uaGGCUGGGGCCGUGAGGgggCGUUa -5'
24653 5' -63.1 NC_005264.1 + 127367 0.67 0.531879
Target:  5'- -aUCGGCCgCGGCACUCUCgCGuCAGg -3'
miRNA:   3'- uaGGCUGGgGCCGUGAGGGgGC-GUUa -5'
24653 5' -63.1 NC_005264.1 + 96589 0.67 0.512984
Target:  5'- gAUCUGGCCCUGGCagagauGCUaggCCCGCAGc -3'
miRNA:   3'- -UAGGCUGGGGCCG------UGAgg-GGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 162455 0.67 0.50364
Target:  5'- --aCGACCgcgCCGGCGCUgCCCCC-CAAa -3'
miRNA:   3'- uagGCUGG---GGCCGUGA-GGGGGcGUUa -5'
24653 5' -63.1 NC_005264.1 + 93622 0.67 0.494371
Target:  5'- -gCUGGCCgCUGaGCugUCCUCCGCAu- -3'
miRNA:   3'- uaGGCUGG-GGC-CGugAGGGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 105809 0.67 0.493448
Target:  5'- gGUCgCGACCCaCGGCuacacaucagacgACUCCgCUGCAGa -3'
miRNA:   3'- -UAG-GCUGGG-GCCG-------------UGAGGgGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 24367 0.68 0.476072
Target:  5'- cUCUGGCaugaCCGGCuucgcgGCUCCCCCgGCGGc -3'
miRNA:   3'- uAGGCUGg---GGCCG------UGAGGGGG-CGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.