Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24653 | 5' | -63.1 | NC_005264.1 | + | 162455 | 0.67 | 0.50364 |
Target: 5'- --aCGACCgcgCCGGCGCUgCCCCC-CAAa -3' miRNA: 3'- uagGCUGG---GGCCGUGA-GGGGGcGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 159435 | 0.66 | 0.59967 |
Target: 5'- cGUCCcucCCCCGcGCACcgaCCCCGCGu- -3' miRNA: 3'- -UAGGcu-GGGGC-CGUGag-GGGGCGUua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 157579 | 0.68 | 0.431878 |
Target: 5'- -gCCgGGCUUgGGCGCUUCCCCGUAGc -3' miRNA: 3'- uaGG-CUGGGgCCGUGAGGGGGCGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 154712 | 0.69 | 0.40654 |
Target: 5'- -cCCGACCUCGGCGuCUCCucagCCCGUu-- -3' miRNA: 3'- uaGGCUGGGGCCGU-GAGG----GGGCGuua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 152885 | 0.66 | 0.59967 |
Target: 5'- --aCGGgUCCGGCAgUCCCUCGCc-- -3' miRNA: 3'- uagGCUgGGGCCGUgAGGGGGCGuua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 150078 | 0.66 | 0.5801 |
Target: 5'- -gUUGugCCCGGCGCUgCCCCa---- -3' miRNA: 3'- uaGGCugGGGCCGUGAgGGGGcguua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 146336 | 0.66 | 0.570364 |
Target: 5'- cAUCCGucuGCgCCGGCGugcCUCgaCCCCGCAGg -3' miRNA: 3'- -UAGGC---UGgGGCCGU---GAG--GGGGCGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 146276 | 0.73 | 0.23448 |
Target: 5'- -gCCGccGCCCCGGCGCcgCCCaCCGCGc- -3' miRNA: 3'- uaGGC--UGGGGCCGUGa-GGG-GGCGUua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 146067 | 0.72 | 0.275497 |
Target: 5'- cGUCCGGCCCgaaCaGCGCgCCCCCGCGc- -3' miRNA: 3'- -UAGGCUGGG---GcCGUGaGGGGGCGUua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 141501 | 0.7 | 0.348198 |
Target: 5'- cAUCCGGCCCCGGCGCaUCUacgggcgccacaaCUGCAc- -3' miRNA: 3'- -UAGGCUGGGGCCGUG-AGGg------------GGCGUua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 127367 | 0.67 | 0.531879 |
Target: 5'- -aUCGGCCgCGGCACUCUCgCGuCAGg -3' miRNA: 3'- uaGGCUGGgGCCGUGAGGGgGC-GUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 122026 | 0.68 | 0.457227 |
Target: 5'- ---gGACCggCCGGCGCUaaucauccagcgcCCCCCGCAGUu -3' miRNA: 3'- uaggCUGG--GGCCGUGA-------------GGGGGCGUUA- -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 114213 | 0.66 | 0.551019 |
Target: 5'- -aCCGACgCCGGCuugcccacCUCCCCgGCc-- -3' miRNA: 3'- uaGGCUGgGGCCGu-------GAGGGGgCGuua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 108714 | 0.68 | 0.467049 |
Target: 5'- -aCCGACCCCGGCgcgcucgaACUCUCCacugacaucuUGCGGUu -3' miRNA: 3'- uaGGCUGGGGCCG--------UGAGGGG----------GCGUUA- -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 105809 | 0.67 | 0.493448 |
Target: 5'- gGUCgCGACCCaCGGCuacacaucagacgACUCCgCUGCAGa -3' miRNA: 3'- -UAG-GCUGGG-GCCG-------------UGAGGgGGCGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 96589 | 0.67 | 0.512984 |
Target: 5'- gAUCUGGCCCUGGCagagauGCUaggCCCGCAGc -3' miRNA: 3'- -UAGGCUGGGGCCG------UGAgg-GGGCGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 95149 | 0.68 | 0.447517 |
Target: 5'- --aCGGCCCgGGCGCagagcuauucugCCCCUGCAAg -3' miRNA: 3'- uagGCUGGGgCCGUGa-----------GGGGGCGUUa -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 93622 | 0.67 | 0.494371 |
Target: 5'- -gCUGGCCgCUGaGCugUCCUCCGCAu- -3' miRNA: 3'- uaGGCUGG-GGC-CGugAGGGGGCGUua -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 93325 | 1.03 | 0.001788 |
Target: 5'- uAUCCGACCCCGGCACUCCCCCGCAAUc -3' miRNA: 3'- -UAGGCUGGGGCCGUGAGGGGGCGUUA- -5' |
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24653 | 5' | -63.1 | NC_005264.1 | + | 90717 | 0.66 | 0.560669 |
Target: 5'- uAUCCGGCaggCGGCGCUCCCUCa---- -3' miRNA: 3'- -UAGGCUGgg-GCCGUGAGGGGGcguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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