miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24653 5' -63.1 NC_005264.1 + 122026 0.68 0.457227
Target:  5'- ---gGACCggCCGGCGCUaaucauccagcgcCCCCCGCAGUu -3'
miRNA:   3'- uaggCUGG--GGCCGUGA-------------GGGGGCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 154712 0.69 0.40654
Target:  5'- -cCCGACCUCGGCGuCUCCucagCCCGUu-- -3'
miRNA:   3'- uaGGCUGGGGCCGU-GAGG----GGGCGuua -5'
24653 5' -63.1 NC_005264.1 + 141501 0.7 0.348198
Target:  5'- cAUCCGGCCCCGGCGCaUCUacgggcgccacaaCUGCAc- -3'
miRNA:   3'- -UAGGCUGGGGCCGUG-AGGg------------GGCGUua -5'
24653 5' -63.1 NC_005264.1 + 28895 0.71 0.322056
Target:  5'- ---aGACCCCGGCcaaGCuUCCCaCCGCAAUu -3'
miRNA:   3'- uaggCUGGGGCCG---UG-AGGG-GGCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 93325 1.03 0.001788
Target:  5'- uAUCCGACCCCGGCACUCCCCCGCAAUc -3'
miRNA:   3'- -UAGGCUGGGGCCGUGAGGGGGCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 114213 0.66 0.551019
Target:  5'- -aCCGACgCCGGCuugcccacCUCCCCgGCc-- -3'
miRNA:   3'- uaGGCUGgGGCCGu-------GAGGGGgCGuua -5'
24653 5' -63.1 NC_005264.1 + 64989 0.66 0.5801
Target:  5'- uUCCG-CUgCGGCGCUCUacguagUCCGCGAUg -3'
miRNA:   3'- uAGGCuGGgGCCGUGAGG------GGGCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 33815 0.66 0.5801
Target:  5'- -aCCGGCUcgCCGGCAaggcuguagcuaUUCCCCUGCGc- -3'
miRNA:   3'- uaGGCUGG--GGCCGU------------GAGGGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 90717 0.66 0.560669
Target:  5'- uAUCCGGCaggCGGCGCUCCCUCa---- -3'
miRNA:   3'- -UAGGCUGgg-GCCGUGAGGGGGcguua -5'
24653 5' -63.1 NC_005264.1 + 68969 0.66 0.551019
Target:  5'- -gCCGGCCUgccaCGGCACgacuaCCCgCCGCAu- -3'
miRNA:   3'- uaGGCUGGG----GCCGUGa----GGG-GGCGUua -5'
24653 5' -63.1 NC_005264.1 + 108714 0.68 0.467049
Target:  5'- -aCCGACCCCGGCgcgcucgaACUCUCCacugacaucuUGCGGUu -3'
miRNA:   3'- uaGGCUGGGGCCG--------UGAGGGG----------GCGUUA- -5'
24653 5' -63.1 NC_005264.1 + 152885 0.66 0.59967
Target:  5'- --aCGGgUCCGGCAgUCCCUCGCc-- -3'
miRNA:   3'- uagGCUgGGGCCGUgAGGGGGCGuua -5'
24653 5' -63.1 NC_005264.1 + 42617 0.67 0.541421
Target:  5'- -aCCGGCCCCGGCGCUUCg--GUAAa -3'
miRNA:   3'- uaGGCUGGGGCCGUGAGGgggCGUUa -5'
24653 5' -63.1 NC_005264.1 + 146336 0.66 0.570364
Target:  5'- cAUCCGucuGCgCCGGCGugcCUCgaCCCCGCAGg -3'
miRNA:   3'- -UAGGC---UGgGGCCGU---GAG--GGGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 159435 0.66 0.59967
Target:  5'- cGUCCcucCCCCGcGCACcgaCCCCGCGu- -3'
miRNA:   3'- -UAGGcu-GGGGC-CGUGag-GGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 95149 0.68 0.447517
Target:  5'- --aCGGCCCgGGCGCagagcuauucugCCCCUGCAAg -3'
miRNA:   3'- uagGCUGGGgCCGUGa-----------GGGGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 146067 0.72 0.275497
Target:  5'- cGUCCGGCCCgaaCaGCGCgCCCCCGCGc- -3'
miRNA:   3'- -UAGGCUGGG---GcCGUGaGGGGGCGUua -5'
24653 5' -63.1 NC_005264.1 + 35686 0.69 0.40654
Target:  5'- -cCCGACCUCGGCGuCUCCucagCCCGUu-- -3'
miRNA:   3'- uaGGCUGGGGCCGU-GAGG----GGGCGuua -5'
24653 5' -63.1 NC_005264.1 + 157579 0.68 0.431878
Target:  5'- -gCCgGGCUUgGGCGCUUCCCCGUAGc -3'
miRNA:   3'- uaGG-CUGGGgCCGUGAGGGGGCGUUa -5'
24653 5' -63.1 NC_005264.1 + 2999 0.68 0.457227
Target:  5'- ---gGACCggCCGGCGCUaaucauccagcgcCCCCCGCAGUu -3'
miRNA:   3'- uaggCUGG--GGCCGUGA-------------GGGGGCGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.