miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24654 5' -53.1 NC_005264.1 + 93593 1.08 0.006035
Target:  5'- gGAUGAGGCGCGCGAGUACCAGAAACUa -3'
miRNA:   3'- -CUACUCCGCGCGCUCAUGGUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 16276 0.67 0.961351
Target:  5'- -cUGAGGCGCG-----GCCAGAAACc -3'
miRNA:   3'- cuACUCCGCGCgcucaUGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 106458 0.68 0.918834
Target:  5'- --gGAGGCGCGCugguucgGAGgACCuGAAACc -3'
miRNA:   3'- cuaCUCCGCGCG-------CUCaUGGuCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 148651 0.68 0.913514
Target:  5'- cGAUGGGGCGacgGCGAucGCCAccGAGGCg -3'
miRNA:   3'- -CUACUCCGCg--CGCUcaUGGU--CUUUGa -5'
24654 5' -53.1 NC_005264.1 + 72809 0.69 0.897025
Target:  5'- -uUGAGcaaucuccccaucaaGCGCGCGAcaACCGGAAACg -3'
miRNA:   3'- cuACUC---------------CGCGCGCUcaUGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 77061 0.7 0.849664
Target:  5'- --aGAGGCGCGCGAGcUACUAa----- -3'
miRNA:   3'- cuaCUCCGCGCGCUC-AUGGUcuuuga -5'
24654 5' -53.1 NC_005264.1 + 162192 0.66 0.976494
Target:  5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3'
miRNA:   3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5'
24654 5' -53.1 NC_005264.1 + 124333 0.66 0.964814
Target:  5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3'
miRNA:   3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 64270 0.67 0.94516
Target:  5'- cGGUGAGGCuggcuaCGCGGGUGCC-GAGuaucGCg -3'
miRNA:   3'- -CUACUCCGc-----GCGCUCAUGGuCUU----UGa -5'
24654 5' -53.1 NC_005264.1 + 49614 0.69 0.907368
Target:  5'- --cGGGGgGCGCucggugGGGUACCAGggGg- -3'
miRNA:   3'- cuaCUCCgCGCG------CUCAUGGUCuuUga -5'
24654 5' -53.1 NC_005264.1 + 114306 0.78 0.45518
Target:  5'- --gGGGGCGCGCGGGacgACgCGGAAACUu -3'
miRNA:   3'- cuaCUCCGCGCGCUCa--UG-GUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 146319 0.66 0.971076
Target:  5'- -uUGAGGCGUGCuuGUACCAu----- -3'
miRNA:   3'- cuACUCCGCGCGcuCAUGGUcuuuga -5'
24654 5' -53.1 NC_005264.1 + 50563 0.74 0.626555
Target:  5'- ---uAGGCGCGCGcGUGCgGGAAGCg -3'
miRNA:   3'- cuacUCCGCGCGCuCAUGgUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 19423 0.68 0.919412
Target:  5'- --cGAGGCGC-CGGGUgugGCCGcGggGCg -3'
miRNA:   3'- cuaCUCCGCGcGCUCA---UGGU-CuuUGa -5'
24654 5' -53.1 NC_005264.1 + 45774 0.66 0.971076
Target:  5'- --cGGGGCGCGCgGAGUggggagucgagAUCGGAGuCUg -3'
miRNA:   3'- cuaCUCCGCGCG-CUCA-----------UGGUCUUuGA- -5'
24654 5' -53.1 NC_005264.1 + 45570 0.73 0.719838
Target:  5'- cGUGucGGCGCGCacGAGUcccucggauACCAGAAACUg -3'
miRNA:   3'- cUACu-CCGCGCG--CUCA---------UGGUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 16770 0.67 0.961351
Target:  5'- cGcgGGGGCGCGCu-GUucggGCCGGAcGCa -3'
miRNA:   3'- -CuaCUCCGCGCGcuCA----UGGUCUuUGa -5'
24654 5' -53.1 NC_005264.1 + 44535 0.69 0.894342
Target:  5'- --cGAcGCGCGCGAGUACaucaccGAGACg -3'
miRNA:   3'- cuaCUcCGCGCGCUCAUGgu----CUUUGa -5'
24654 5' -53.1 NC_005264.1 + 150797 0.68 0.913514
Target:  5'- --gGGGGCGUGUGGGg--CAGGAGCg -3'
miRNA:   3'- cuaCUCCGCGCGCUCaugGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 95771 0.67 0.940508
Target:  5'- --cGcGGCGUGCGAGUAcucguuCCAGgcGCUu -3'
miRNA:   3'- cuaCuCCGCGCGCUCAU------GGUCuuUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.