miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24654 5' -53.1 NC_005264.1 + 80204 0.67 0.953733
Target:  5'- --aGAGGCGCGgGAcguGUGugAGAAGCUu -3'
miRNA:   3'- cuaCUCCGCGCgCU---CAUggUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 81902 0.66 0.964814
Target:  5'- cGAUG-GGCGgGCGA--GCCAGcaGAACg -3'
miRNA:   3'- -CUACuCCGCgCGCUcaUGGUC--UUUGa -5'
24654 5' -53.1 NC_005264.1 + 85828 0.66 0.973887
Target:  5'- --aGAaGCGCGCGcucAGUACCGGGucuuGCg -3'
miRNA:   3'- cuaCUcCGCGCGC---UCAUGGUCUu---UGa -5'
24654 5' -53.1 NC_005264.1 + 93593 1.08 0.006035
Target:  5'- gGAUGAGGCGCGCGAGUACCAGAAACUa -3'
miRNA:   3'- -CUACUCCGCGCGCUCAUGGUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 94479 0.67 0.94516
Target:  5'- --cGAGGuCGUGCGc--ACCAGGAACa -3'
miRNA:   3'- cuaCUCC-GCGCGCucaUGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 95771 0.67 0.940508
Target:  5'- --cGcGGCGUGCGAGUAcucguuCCAGgcGCUu -3'
miRNA:   3'- cuaCuCCGCGCGCUCAU------GGUCuuUGA- -5'
24654 5' -53.1 NC_005264.1 + 96894 0.66 0.973887
Target:  5'- cAUGGcGGCGCGCGAGgGCgCGGcAAAUc -3'
miRNA:   3'- cUACU-CCGCGCGCUCaUG-GUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 97213 0.67 0.94516
Target:  5'- cGGUGc-GCGCGCGGGUACCcacGAGCc -3'
miRNA:   3'- -CUACucCGCGCGCUCAUGGuc-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 106247 0.7 0.833053
Target:  5'- aGAUGGGcCGCGCGuAGcGCCAGAAAa- -3'
miRNA:   3'- -CUACUCcGCGCGC-UCaUGGUCUUUga -5'
24654 5' -53.1 NC_005264.1 + 106458 0.68 0.918834
Target:  5'- --gGAGGCGCGCugguucgGAGgACCuGAAACc -3'
miRNA:   3'- cuaCUCCGCGCG-------CUCaUGGuCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 114306 0.78 0.45518
Target:  5'- --gGGGGCGCGCGGGacgACgCGGAAACUu -3'
miRNA:   3'- cuaCUCCGCGCGCUCa--UG-GUCUUUGA- -5'
24654 5' -53.1 NC_005264.1 + 124333 0.66 0.964814
Target:  5'- cGUGGGGCGgGCGAcuggcgggaGUACgGGgAGACg -3'
miRNA:   3'- cUACUCCGCgCGCU---------CAUGgUC-UUUGa -5'
24654 5' -53.1 NC_005264.1 + 130269 0.67 0.94516
Target:  5'- ---cGGGUGCGCGAcGUugCGGcgGCUa -3'
miRNA:   3'- cuacUCCGCGCGCU-CAugGUCuuUGA- -5'
24654 5' -53.1 NC_005264.1 + 146319 0.66 0.971076
Target:  5'- -uUGAGGCGUGCuuGUACCAu----- -3'
miRNA:   3'- cuACUCCGCGCGcuCAUGGUcuuuga -5'
24654 5' -53.1 NC_005264.1 + 148651 0.68 0.913514
Target:  5'- cGAUGGGGCGacgGCGAucGCCAccGAGGCg -3'
miRNA:   3'- -CUACUCCGCg--CGCUcaUGGU--CUUUGa -5'
24654 5' -53.1 NC_005264.1 + 150797 0.68 0.913514
Target:  5'- --gGGGGCGUGUGGGg--CAGGAGCg -3'
miRNA:   3'- cuaCUCCGCGCGCUCaugGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 161993 0.72 0.778913
Target:  5'- gGggGAGGCGgauCGUGGGgcacGCCAGAGACa -3'
miRNA:   3'- -CuaCUCCGC---GCGCUCa---UGGUCUUUGa -5'
24654 5' -53.1 NC_005264.1 + 162192 0.66 0.976494
Target:  5'- gGggGGGGCGCGUGAGccucuaucgcgcUGCCuGcGACg -3'
miRNA:   3'- -CuaCUCCGCGCGCUC------------AUGGuCuUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.