miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24655 3' -50.1 NC_005264.1 + 37913 0.66 0.995921
Target:  5'- uGGGCUCGCGUaAUucGCU-CCGUGGUc -3'
miRNA:   3'- gUUCGAGCGCAaUGu-UGAcGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 65745 0.66 0.995216
Target:  5'- --cGCUgGcCGUUaACGACcGCCGUGAUg -3'
miRNA:   3'- guuCGAgC-GCAA-UGUUGaCGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 131976 0.66 0.995216
Target:  5'- uGGGCUCGCG--ACGACagGCCgGUGGc -3'
miRNA:   3'- gUUCGAGCGCaaUGUUGa-CGG-UACUa -5'
24655 3' -50.1 NC_005264.1 + 30305 0.66 0.992158
Target:  5'- uCAGGUUCGCgGUUGCAcccguguuucagaaGCUGCU-UGAUa -3'
miRNA:   3'- -GUUCGAGCG-CAAUGU--------------UGACGGuACUA- -5'
24655 3' -50.1 NC_005264.1 + 54951 0.67 0.991344
Target:  5'- --cGCacCGCGccGCuAGCUGCCAUGAUg -3'
miRNA:   3'- guuCGa-GCGCaaUG-UUGACGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 75414 0.67 0.990067
Target:  5'- -cGGC-CGCGggcagugUACGGCggGCCGUGAUu -3'
miRNA:   3'- guUCGaGCGCa------AUGUUGa-CGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 155964 0.67 0.987072
Target:  5'- -cGGCUCGCGgacGCucuGGCUGCCGUcggGAUa -3'
miRNA:   3'- guUCGAGCGCaa-UG---UUGACGGUA---CUA- -5'
24655 3' -50.1 NC_005264.1 + 17755 0.67 0.987072
Target:  5'- cCAAGUUCGCGgcaaggAgAGCUGCCcgGc- -3'
miRNA:   3'- -GUUCGAGCGCaa----UgUUGACGGuaCua -5'
24655 3' -50.1 NC_005264.1 + 47281 0.67 0.985336
Target:  5'- gCAGGCUgugGUGUggaGAUUGCCAUGAUg -3'
miRNA:   3'- -GUUCGAg--CGCAaugUUGACGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 53565 0.67 0.985336
Target:  5'- gAAGCUCGCGgUACGACgcGCCcgacgcGUGGc -3'
miRNA:   3'- gUUCGAGCGCaAUGUUGa-CGG------UACUa -5'
24655 3' -50.1 NC_005264.1 + 78712 0.67 0.985336
Target:  5'- gGGGCUCGCG----AGCUGCCGcGAg -3'
miRNA:   3'- gUUCGAGCGCaaugUUGACGGUaCUa -5'
24655 3' -50.1 NC_005264.1 + 94499 0.68 0.97657
Target:  5'- aCAuGCUCGCGUUAguGCaGCCGUcGGc -3'
miRNA:   3'- -GUuCGAGCGCAAUguUGaCGGUA-CUa -5'
24655 3' -50.1 NC_005264.1 + 64303 0.69 0.970966
Target:  5'- -cGGCccacagCGCGUUGCcGCUGCCAaGAc -3'
miRNA:   3'- guUCGa-----GCGCAAUGuUGACGGUaCUa -5'
24655 3' -50.1 NC_005264.1 + 15586 0.69 0.964461
Target:  5'- cCAAGCUUGCGggcGCAGCUGCgGc--- -3'
miRNA:   3'- -GUUCGAGCGCaa-UGUUGACGgUacua -5'
24655 3' -50.1 NC_005264.1 + 71749 0.69 0.964461
Target:  5'- -cAGCcaUCGCGUUACGACUaGCCGa--- -3'
miRNA:   3'- guUCG--AGCGCAAUGUUGA-CGGUacua -5'
24655 3' -50.1 NC_005264.1 + 142793 0.7 0.943907
Target:  5'- gGGGC-CGCGUgGCGACaugccagGCCAUGGUa -3'
miRNA:   3'- gUUCGaGCGCAaUGUUGa------CGGUACUA- -5'
24655 3' -50.1 NC_005264.1 + 52873 0.71 0.916824
Target:  5'- gCAGGCUCGCGgUAC--CUGCCAUa-- -3'
miRNA:   3'- -GUUCGAGCGCaAUGuuGACGGUAcua -5'
24655 3' -50.1 NC_005264.1 + 74450 0.75 0.758809
Target:  5'- uGAGCUuCGCGggcaUGCGGCUGgCCGUGAa -3'
miRNA:   3'- gUUCGA-GCGCa---AUGUUGAC-GGUACUa -5'
24655 3' -50.1 NC_005264.1 + 93659 1.05 0.015676
Target:  5'- gCAAGCUCGCGUUACAACUGCCAUGAUc -3'
miRNA:   3'- -GUUCGAGCGCAAUGUUGACGGUACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.