miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24655 5' -59.4 NC_005264.1 + 95458 0.68 0.621603
Target:  5'- cUACCGcgccGGCGGgcgcagcgAGCGCGGGCgcUACGu -3'
miRNA:   3'- aAUGGCa---CCGUCa-------UCGCGCCCG--GUGU- -5'
24655 5' -59.4 NC_005264.1 + 75415 0.68 0.611479
Target:  5'- -gGCCGcgGGCAGUGuacgGCGGGCCGu- -3'
miRNA:   3'- aaUGGCa-CCGUCAUcg--CGCCCGGUgu -5'
24655 5' -59.4 NC_005264.1 + 17805 0.69 0.581227
Target:  5'- gUACC-UGGCGGUAG-GCccuGGCCACGg -3'
miRNA:   3'- aAUGGcACCGUCAUCgCGc--CCGGUGU- -5'
24655 5' -59.4 NC_005264.1 + 129387 0.69 0.569207
Target:  5'- -gACCGUGGCGGgaauuaauagucAGCGCGGGgguuuauucUCGCGg -3'
miRNA:   3'- aaUGGCACCGUCa-----------UCGCGCCC---------GGUGU- -5'
24655 5' -59.4 NC_005264.1 + 131675 0.7 0.525744
Target:  5'- -gACCGUuggcGGCAcgucggcucgcaagcGUAGCGUGGGCCuGCGc -3'
miRNA:   3'- aaUGGCA----CCGU---------------CAUCGCGCCCGG-UGU- -5'
24655 5' -59.4 NC_005264.1 + 97531 0.7 0.502563
Target:  5'- -gGCUGUGGC-GUGGCaGCGGGCaagaGCc -3'
miRNA:   3'- aaUGGCACCGuCAUCG-CGCCCGg---UGu -5'
24655 5' -59.4 NC_005264.1 + 92492 0.71 0.474237
Target:  5'- cUGCgGUGGCGGU-GCGCcuGGCCAUc -3'
miRNA:   3'- aAUGgCACCGUCAuCGCGc-CCGGUGu -5'
24655 5' -59.4 NC_005264.1 + 42517 0.71 0.464973
Target:  5'- -cACUGUGGCcugauguGUGGCGUGGG-CGCAg -3'
miRNA:   3'- aaUGGCACCGu------CAUCGCGCCCgGUGU- -5'
24655 5' -59.4 NC_005264.1 + 26364 0.71 0.428899
Target:  5'- -cGCCGcGGCAGgcuGCGCGGcGCCGu- -3'
miRNA:   3'- aaUGGCaCCGUCau-CGCGCC-CGGUgu -5'
24655 5' -59.4 NC_005264.1 + 102753 0.71 0.428899
Target:  5'- -gGCCGccGGCAGUaggcuaGGgGCGGGCCAg- -3'
miRNA:   3'- aaUGGCa-CCGUCA------UCgCGCCCGGUgu -5'
24655 5' -59.4 NC_005264.1 + 28954 0.73 0.354931
Target:  5'- -aGCCGUGGguGaacgccaagacucugAGCGCGGaGCCGCu -3'
miRNA:   3'- aaUGGCACCguCa--------------UCGCGCC-CGGUGu -5'
24655 5' -59.4 NC_005264.1 + 110582 0.73 0.331366
Target:  5'- aUGCCGUGGCcgGGUgaguaGGCGgGGGCCcCGa -3'
miRNA:   3'- aAUGGCACCG--UCA-----UCGCgCCCGGuGU- -5'
24655 5' -59.4 NC_005264.1 + 93823 0.76 0.244665
Target:  5'- -cGCCGUGGCacAGUacgauggcgacagGGcCGCGGGCCACu -3'
miRNA:   3'- aaUGGCACCG--UCA-------------UC-GCGCCCGGUGu -5'
24655 5' -59.4 NC_005264.1 + 93693 1.06 0.00203
Target:  5'- cUUACCGUGGCAGUAGCGCGGGCCACAg -3'
miRNA:   3'- -AAUGGCACCGUCAUCGCGCCCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.