miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24655 5' -59.4 NC_005264.1 + 26115 0.68 0.631735
Target:  5'- -cACCGcgcGGCucGUGGCGCGGcGCCGa- -3'
miRNA:   3'- aaUGGCa--CCGu-CAUCGCGCC-CGGUgu -5'
24655 5' -59.4 NC_005264.1 + 14259 0.66 0.740438
Target:  5'- gUACUGUagcgcguuccucgGGCAcGU--CGCGGGCCACGa -3'
miRNA:   3'- aAUGGCA-------------CCGU-CAucGCGCCCGGUGU- -5'
24655 5' -59.4 NC_005264.1 + 40038 0.66 0.750987
Target:  5'- gUGCgGUGGCgcuaacacucuGGUuucgaGGuCGCGGGCCugGu -3'
miRNA:   3'- aAUGgCACCG-----------UCA-----UC-GCGCCCGGugU- -5'
24655 5' -59.4 NC_005264.1 + 93693 1.06 0.00203
Target:  5'- cUUACCGUGGCAGUAGCGCGGGCCACAg -3'
miRNA:   3'- -AAUGGCACCGUCAUCGCGCCCGGUGU- -5'
24655 5' -59.4 NC_005264.1 + 93823 0.76 0.244665
Target:  5'- -cGCCGUGGCacAGUacgauggcgacagGGcCGCGGGCCACu -3'
miRNA:   3'- aaUGGCACCG--UCA-------------UC-GCGCCCGGUGu -5'
24655 5' -59.4 NC_005264.1 + 110582 0.73 0.331366
Target:  5'- aUGCCGUGGCcgGGUgaguaGGCGgGGGCCcCGa -3'
miRNA:   3'- aAUGGCACCG--UCA-----UCGCgCCCGGuGU- -5'
24655 5' -59.4 NC_005264.1 + 28954 0.73 0.354931
Target:  5'- -aGCCGUGGguGaacgccaagacucugAGCGCGGaGCCGCu -3'
miRNA:   3'- aaUGGCACCguCa--------------UCGCGCC-CGGUGu -5'
24655 5' -59.4 NC_005264.1 + 42517 0.71 0.464973
Target:  5'- -cACUGUGGCcugauguGUGGCGUGGG-CGCAg -3'
miRNA:   3'- aaUGGCACCGu------CAUCGCGCCCgGUGU- -5'
24655 5' -59.4 NC_005264.1 + 92492 0.71 0.474237
Target:  5'- cUGCgGUGGCGGU-GCGCcuGGCCAUc -3'
miRNA:   3'- aAUGgCACCGUCAuCGCGc-CCGGUGu -5'
24655 5' -59.4 NC_005264.1 + 150986 0.66 0.731723
Target:  5'- -cGCgaGUGGC---GGCGaCGGGCCGCGu -3'
miRNA:   3'- aaUGg-CACCGucaUCGC-GCCCGGUGU- -5'
24655 5' -59.4 NC_005264.1 + 122830 0.66 0.731723
Target:  5'- ---gCGUGGCGGUccgcgaguucgGGCccggGCGGGgCCGCAg -3'
miRNA:   3'- aaugGCACCGUCA-----------UCG----CGCCC-GGUGU- -5'
24655 5' -59.4 NC_005264.1 + 12685 0.67 0.682238
Target:  5'- uUUAUCGUGGCccugauuguuuuGGcguGCGCGGGCCcucugACAu -3'
miRNA:   3'- -AAUGGCACCG------------UCau-CGCGCCCGG-----UGU- -5'
24655 5' -59.4 NC_005264.1 + 47853 0.66 0.731723
Target:  5'- --cCCGUGGCGGgGGCa-GGGCC-CAa -3'
miRNA:   3'- aauGGCACCGUCaUCGcgCCCGGuGU- -5'
24655 5' -59.4 NC_005264.1 + 29123 0.67 0.682238
Target:  5'- --cCCGaGGCuGUaccugaggAGCGCGuGGCCGCAu -3'
miRNA:   3'- aauGGCaCCGuCA--------UCGCGC-CCGGUGU- -5'
24655 5' -59.4 NC_005264.1 + 91899 0.66 0.721959
Target:  5'- -gGCCGcGGCAGcgaugggcgGGCGCGGcGaCCAUAc -3'
miRNA:   3'- aaUGGCaCCGUCa--------UCGCGCC-C-GGUGU- -5'
24655 5' -59.4 NC_005264.1 + 19428 0.66 0.731723
Target:  5'- -cGCCG-GGU-GUGGcCGCGGGgCGCGg -3'
miRNA:   3'- aaUGGCaCCGuCAUC-GCGCCCgGUGU- -5'
24655 5' -59.4 NC_005264.1 + 93005 0.66 0.754793
Target:  5'- -gGCCGUagcgggggcagucaaGGCAGUGGCuaGuGGCCuCAa -3'
miRNA:   3'- aaUGGCA---------------CCGUCAUCGcgC-CCGGuGU- -5'
24655 5' -59.4 NC_005264.1 + 152968 0.67 0.70122
Target:  5'- -gGCCGUGGCgcgccGGgaccGCGCccgauagGGGCCGCu -3'
miRNA:   3'- aaUGGCACCG-----UCau--CGCG-------CCCGGUGu -5'
24655 5' -59.4 NC_005264.1 + 52205 0.67 0.71212
Target:  5'- -gGCCGUGgggcGCGGUGGCGCGaGCUg-- -3'
miRNA:   3'- aaUGGCAC----CGUCAUCGCGCcCGGugu -5'
24655 5' -59.4 NC_005264.1 + 17805 0.69 0.581227
Target:  5'- gUACC-UGGCGGUAG-GCccuGGCCACGg -3'
miRNA:   3'- aAUGGcACCGUCAUCgCGc--CCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.