miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24656 3' -57.9 NC_005264.1 + 19710 0.66 0.886301
Target:  5'- cGUGCGUGugGugGuu--CCUaCCCGg -3'
miRNA:   3'- cCACGCGCugCugCuacuGGAcGGGC- -5'
24656 3' -57.9 NC_005264.1 + 21036 0.66 0.886301
Target:  5'- ----gGCGACGAgGAccaugGACCUGgCCGg -3'
miRNA:   3'- ccacgCGCUGCUgCUa----CUGGACgGGC- -5'
24656 3' -57.9 NC_005264.1 + 33283 0.66 0.879533
Target:  5'- cGGUGCcacgaccacGCGGCGACGccuaaGCCcacGCCCGc -3'
miRNA:   3'- -CCACG---------CGCUGCUGCuac--UGGa--CGGGC- -5'
24656 3' -57.9 NC_005264.1 + 71865 0.66 0.879533
Target:  5'- cGGUGUuccGCGACGgcACGcgGGC--GCCCGa -3'
miRNA:   3'- -CCACG---CGCUGC--UGCuaCUGgaCGGGC- -5'
24656 3' -57.9 NC_005264.1 + 156427 0.66 0.872558
Target:  5'- -cUGCGgcUGGCGGCGGUGAUC-GCCuCGa -3'
miRNA:   3'- ccACGC--GCUGCUGCUACUGGaCGG-GC- -5'
24656 3' -57.9 NC_005264.1 + 114194 0.66 0.865381
Target:  5'- cGUGCcaGCGGaauacccaacCGACGccGGCUUGCCCa -3'
miRNA:   3'- cCACG--CGCU----------GCUGCuaCUGGACGGGc -5'
24656 3' -57.9 NC_005264.1 + 104061 0.66 0.865381
Target:  5'- aGGgGgGCGGuCGACGAUuacGGCgaGCCCa -3'
miRNA:   3'- -CCaCgCGCU-GCUGCUA---CUGgaCGGGc -5'
24656 3' -57.9 NC_005264.1 + 651 0.66 0.865381
Target:  5'- --aGCGacCGGCGacuaaGCGAUGagccugacgggaGCCUGCCCGa -3'
miRNA:   3'- ccaCGC--GCUGC-----UGCUAC------------UGGACGGGC- -5'
24656 3' -57.9 NC_005264.1 + 27972 0.66 0.865381
Target:  5'- cGGUGCGCGccCGugGuaucUGACCgagaagGCgCCa -3'
miRNA:   3'- -CCACGCGCu-GCugCu---ACUGGa-----CG-GGc -5'
24656 3' -57.9 NC_005264.1 + 120146 0.66 0.858006
Target:  5'- cGGaGCGcCGGcCGGCGAUGACCgagcaGaCCUGg -3'
miRNA:   3'- -CCaCGC-GCU-GCUGCUACUGGa----C-GGGC- -5'
24656 3' -57.9 NC_005264.1 + 148251 0.66 0.855003
Target:  5'- cGUuCGCGGCGGCGuuucacgggacaGAUUUGCCCGg -3'
miRNA:   3'- cCAcGCGCUGCUGCua----------CUGGACGGGC- -5'
24656 3' -57.9 NC_005264.1 + 12968 0.67 0.850441
Target:  5'- cGGcGCGCGccgcCGACGAcGACgCgaGCCCGu -3'
miRNA:   3'- -CCaCGCGCu---GCUGCUaCUG-Ga-CGGGC- -5'
24656 3' -57.9 NC_005264.1 + 126122 0.67 0.850441
Target:  5'- -aUGCGCGGCGGCugagccGAUGgcACUUGCgCGg -3'
miRNA:   3'- ccACGCGCUGCUG------CUAC--UGGACGgGC- -5'
24656 3' -57.9 NC_005264.1 + 77515 0.67 0.850441
Target:  5'- gGGUuCGCGACGACGAacUGcACUauCCCGu -3'
miRNA:   3'- -CCAcGCGCUGCUGCU--AC-UGGacGGGC- -5'
24656 3' -57.9 NC_005264.1 + 150231 0.67 0.850441
Target:  5'- -uUGCGCGGCGACGAguaACCUcGCa-- -3'
miRNA:   3'- ccACGCGCUGCUGCUac-UGGA-CGggc -5'
24656 3' -57.9 NC_005264.1 + 159996 0.67 0.842689
Target:  5'- --cGgGCGACGGCGcgagcgcGACCgGCCCu -3'
miRNA:   3'- ccaCgCGCUGCUGCua-----CUGGaCGGGc -5'
24656 3' -57.9 NC_005264.1 + 40969 0.67 0.842689
Target:  5'- --cGgGCGACGGCGcgagcgcGACCgGCCCu -3'
miRNA:   3'- ccaCgCGCUGCUGCua-----CUGGaCGGGc -5'
24656 3' -57.9 NC_005264.1 + 50261 0.67 0.826653
Target:  5'- -cUGcCGCGGCGGCGAUuccGAgUUGCUCGu -3'
miRNA:   3'- ccAC-GCGCUGCUGCUA---CUgGACGGGC- -5'
24656 3' -57.9 NC_005264.1 + 104112 0.67 0.818383
Target:  5'- -aUGgGCGACGucccccUGGUGGCC-GCCCGc -3'
miRNA:   3'- ccACgCGCUGCu-----GCUACUGGaCGGGC- -5'
24656 3' -57.9 NC_005264.1 + 56965 0.67 0.818383
Target:  5'- uGUG-GCGGCGACGAgucCCUcgucGCCCGc -3'
miRNA:   3'- cCACgCGCUGCUGCUacuGGA----CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.