miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24656 5' -53.9 NC_005264.1 + 43565 0.66 0.97144
Target:  5'- uGUCGAGcGGccCGcCUCGCUGUGGCGc -3'
miRNA:   3'- -CGGUUUcUCuaGCuGAGCGGCACCGU- -5'
24656 5' -53.9 NC_005264.1 + 79583 0.66 0.97144
Target:  5'- uGCCAGAcGGGAUCGuGCuUCGCCucggagaaGUGGaCGa -3'
miRNA:   3'- -CGGUUU-CUCUAGC-UG-AGCGG--------CACC-GU- -5'
24656 5' -53.9 NC_005264.1 + 162592 0.66 0.97144
Target:  5'- uGUCGAGcGGccCGcCUCGCUGUGGCGc -3'
miRNA:   3'- -CGGUUUcUCuaGCuGAGCGGCACCGU- -5'
24656 5' -53.9 NC_005264.1 + 3763 0.66 0.969694
Target:  5'- cGCCGGGGcgcugcgggcccuuGGUCGAC-CGCCGccgaucugcgUGGCGg -3'
miRNA:   3'- -CGGUUUCu-------------CUAGCUGaGCGGC----------ACCGU- -5'
24656 5' -53.9 NC_005264.1 + 3290 0.66 0.969694
Target:  5'- cGCCAGAGucgugagcucgcgcgGGAUCG-CgCGCCGUG-CAa -3'
miRNA:   3'- -CGGUUUC---------------UCUAGCuGaGCGGCACcGU- -5'
24656 5' -53.9 NC_005264.1 + 122789 0.66 0.969694
Target:  5'- cGCCGGGGcgcugcgggcccuuGGUCGAC-CGCCGccgaucugcgUGGCGg -3'
miRNA:   3'- -CGGUUUCu-------------CUAGCUGaGCGGC----------ACCGU- -5'
24656 5' -53.9 NC_005264.1 + 130058 0.66 0.968489
Target:  5'- gGCCAGAcc-GUCG-CU-GCCGUGGCGa -3'
miRNA:   3'- -CGGUUUcucUAGCuGAgCGGCACCGU- -5'
24656 5' -53.9 NC_005264.1 + 59761 0.66 0.965328
Target:  5'- cUCGGGGGGcaCGaACUgGCCGUGGCu -3'
miRNA:   3'- cGGUUUCUCuaGC-UGAgCGGCACCGu -5'
24656 5' -53.9 NC_005264.1 + 82081 0.66 0.965328
Target:  5'- uGCgCGGAGGGGUCGAgCguuccCGCCuUGGCc -3'
miRNA:   3'- -CG-GUUUCUCUAGCU-Ga----GCGGcACCGu -5'
24656 5' -53.9 NC_005264.1 + 1607 0.66 0.965328
Target:  5'- gGCC--AGGGAUaCGGgaCGCCGgugGGCGc -3'
miRNA:   3'- -CGGuuUCUCUA-GCUgaGCGGCa--CCGU- -5'
24656 5' -53.9 NC_005264.1 + 120634 0.66 0.965328
Target:  5'- gGCC--AGGGAUaCGGgaCGCCGgugGGCGc -3'
miRNA:   3'- -CGGuuUCUCUA-GCUgaGCGGCa--CCGU- -5'
24656 5' -53.9 NC_005264.1 + 125018 0.66 0.958352
Target:  5'- gGCCAAGGGGAgucgUCGGC-C-CCGacgGGCGg -3'
miRNA:   3'- -CGGUUUCUCU----AGCUGaGcGGCa--CCGU- -5'
24656 5' -53.9 NC_005264.1 + 154766 0.66 0.958352
Target:  5'- uGCCAggAGGAGGgcaGGCUuuugcUGuuGUGGCAa -3'
miRNA:   3'- -CGGU--UUCUCUag-CUGA-----GCggCACCGU- -5'
24656 5' -53.9 NC_005264.1 + 5991 0.66 0.958352
Target:  5'- gGCCAAGGGGAgucgUCGGC-C-CCGacgGGCGg -3'
miRNA:   3'- -CGGUUUCUCU----AGCUGaGcGGCa--CCGU- -5'
24656 5' -53.9 NC_005264.1 + 69338 0.66 0.958352
Target:  5'- uCCGAAGGGAaCGACgCGCCGgccgccaGCAg -3'
miRNA:   3'- cGGUUUCUCUaGCUGaGCGGCac-----CGU- -5'
24656 5' -53.9 NC_005264.1 + 118135 0.66 0.958352
Target:  5'- gGCCGAGuGGGGUacaUGaACUCuauGCCGUGGCc -3'
miRNA:   3'- -CGGUUU-CUCUA---GC-UGAG---CGGCACCGu -5'
24656 5' -53.9 NC_005264.1 + 132462 0.67 0.950469
Target:  5'- cGCCGccGAGAcgCGACgcggcggCGCCGaaggGGCu -3'
miRNA:   3'- -CGGUuuCUCUa-GCUGa------GCGGCa---CCGu -5'
24656 5' -53.9 NC_005264.1 + 81618 0.67 0.950469
Target:  5'- cGCCAGGGAcGGcCGAugcucauaugcCUCGCgGUGGUg -3'
miRNA:   3'- -CGGUUUCU-CUaGCU-----------GAGCGgCACCGu -5'
24656 5' -53.9 NC_005264.1 + 13435 0.67 0.950469
Target:  5'- cGCCGccGAGAcgCGACgcggcggCGCCGaaggGGCu -3'
miRNA:   3'- -CGGUuuCUCUa-GCUGa------GCGGCa---CCGu -5'
24656 5' -53.9 NC_005264.1 + 137047 0.67 0.941649
Target:  5'- gGCCAAAGc---UGAC-CGCCGUGaGCAg -3'
miRNA:   3'- -CGGUUUCucuaGCUGaGCGGCAC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.