miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 148391 0.66 0.979615
Target:  5'- aGGcuUGCCGccaUGCCuauUGGgGAGGGCaGGCc -3'
miRNA:   3'- -CC--ACGGC---ACGGu--AUUgCUUCUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 98228 0.66 0.979615
Target:  5'- cGG-GCCGcGCU---GCGGAGAgguuaUGGGCg -3'
miRNA:   3'- -CCaCGGCaCGGuauUGCUUCU-----GCCCG- -5'
24657 3' -53.6 NC_005264.1 + 122006 0.66 0.979393
Target:  5'- cGGcgGCCG-GCCAUAGCGGGaucuugagucucGGCGaccccgcGGCa -3'
miRNA:   3'- -CCa-CGGCaCGGUAUUGCUU------------CUGC-------CCG- -5'
24657 3' -53.6 NC_005264.1 + 83157 0.66 0.977312
Target:  5'- uGGUGUC-UGUC---GCGggGAUGGGg -3'
miRNA:   3'- -CCACGGcACGGuauUGCuuCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 19945 0.66 0.977312
Target:  5'- --nGCauCGUcGCCGUGAUGGAGAaaGGCg -3'
miRNA:   3'- ccaCG--GCA-CGGUAUUGCUUCUgcCCG- -5'
24657 3' -53.6 NC_005264.1 + 114281 0.66 0.977312
Target:  5'- -aUGuuGUGCgGacGACGAAGGCgacggGGGCg -3'
miRNA:   3'- ccACggCACGgUa-UUGCUUCUG-----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 24315 0.66 0.97683
Target:  5'- cGGUGCCGagcguugaagggGCCGcAGUGAAcGGCGGGg -3'
miRNA:   3'- -CCACGGCa-----------CGGUaUUGCUU-CUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 150172 0.66 0.976586
Target:  5'- cGGacCCGUGCgGUucuagguuucguguGACGggGGCcggaGGGCg -3'
miRNA:   3'- -CCacGGCACGgUA--------------UUGCuuCUG----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 31145 0.66 0.976586
Target:  5'- cGGacCCGUGCgGUucuagguuucguguGACGggGGCcggaGGGCg -3'
miRNA:   3'- -CCacGGCACGgUA--------------UUGCuuCUG----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 134511 0.66 0.974824
Target:  5'- --aGUCGUGCCgAUAcCGAcuAGACGuaGGCg -3'
miRNA:   3'- ccaCGGCACGG-UAUuGCU--UCUGC--CCG- -5'
24657 3' -53.6 NC_005264.1 + 84896 0.66 0.974824
Target:  5'- cGG-GCCGcGCag-GACGGgaGGGCGGGa -3'
miRNA:   3'- -CCaCGGCaCGguaUUGCU--UCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 3979 0.66 0.972142
Target:  5'- -aUGCUGUuaGCCGcuucGGCGgcGGCGGGUu -3'
miRNA:   3'- ccACGGCA--CGGUa---UUGCuuCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 100413 0.66 0.972142
Target:  5'- uGGUcgugGuuGUGCU---GCGAAGAagcCGGGCc -3'
miRNA:   3'- -CCA----CggCACGGuauUGCUUCU---GCCCG- -5'
24657 3' -53.6 NC_005264.1 + 150059 0.66 0.972142
Target:  5'- cGGUGCCGccuagcgGUCGUGcggcugcguuGCGGAcGGCaGGCg -3'
miRNA:   3'- -CCACGGCa------CGGUAU----------UGCUU-CUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 128684 0.66 0.972142
Target:  5'- aGUGCagaucgucuagCGagGCCuUGGgGGAGGCGGGCu -3'
miRNA:   3'- cCACG-----------GCa-CGGuAUUgCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 142679 0.66 0.972142
Target:  5'- --cGUCGUGCCGcgaucuugGGCGccGGCGGcGCg -3'
miRNA:   3'- ccaCGGCACGGUa-------UUGCuuCUGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 103741 0.66 0.972142
Target:  5'- cGGcgGCC--GCCAUGcuuagguucauGCuGAGGCGGGCg -3'
miRNA:   3'- -CCa-CGGcaCGGUAU-----------UGcUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 80231 0.66 0.972142
Target:  5'- uGG-GCCGUG----GACGGAGAUaauGGGCa -3'
miRNA:   3'- -CCaCGGCACgguaUUGCUUCUG---CCCG- -5'
24657 3' -53.6 NC_005264.1 + 66474 0.66 0.972142
Target:  5'- --cGCCGcgGCCAgacucAAUGcuuGGCGGGCu -3'
miRNA:   3'- ccaCGGCa-CGGUa----UUGCuu-CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 9657 0.66 0.972142
Target:  5'- aGUGCagaucgucuagCGagGCCuUGGgGGAGGCGGGCu -3'
miRNA:   3'- cCACG-----------GCa-CGGuAUUgCUUCUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.