miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 122006 0.66 0.979393
Target:  5'- cGGcgGCCG-GCCAUAGCGGGaucuugagucucGGCGaccccgcGGCa -3'
miRNA:   3'- -CCa-CGGCaCGGUAUUGCUU------------CUGC-------CCG- -5'
24657 3' -53.6 NC_005264.1 + 95464 0.66 0.96926
Target:  5'- --cGCCGgcgGgCGcAGCGAGcGCGGGCg -3'
miRNA:   3'- ccaCGGCa--CgGUaUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 34252 0.66 0.96926
Target:  5'- ---cCCG-GCUucuGUAGCGAGGcGCGGGCg -3'
miRNA:   3'- ccacGGCaCGG---UAUUGCUUC-UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 37649 0.66 0.96896
Target:  5'- cGUGCCccacaucGUGCac--GCGAugcgcGACGGGCg -3'
miRNA:   3'- cCACGG-------CACGguauUGCUu----CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 36248 0.66 0.966171
Target:  5'- cGGaGCCGca-CGUGGCGGAaGCGGGUa -3'
miRNA:   3'- -CCaCGGCacgGUAUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 135678 0.66 0.96585
Target:  5'- --cGCCGUGaa--GACGGccugcacGGACGGGCc -3'
miRNA:   3'- ccaCGGCACgguaUUGCU-------UCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 66207 0.66 0.96585
Target:  5'- cGGUGCgccucCGcgGCCA--GCGAAGgacuuggcgagcuGCGGGCc -3'
miRNA:   3'- -CCACG-----GCa-CGGUauUGCUUC-------------UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 6214 0.66 0.966171
Target:  5'- -cUGuuGaacggGCCu--ACGGAGACGGGUu -3'
miRNA:   3'- ccACggCa----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 155275 0.66 0.966171
Target:  5'- cGGaGCCGca-CGUGGCGGAaGCGGGUa -3'
miRNA:   3'- -CCaCGGCacgGUAUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 135069 0.66 0.96926
Target:  5'- --gGUCGgcgGCCAUccguGgGAAGACGGGa -3'
miRNA:   3'- ccaCGGCa--CGGUAu---UgCUUCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 139807 0.66 0.96926
Target:  5'- cGUGCCGUcgGCCGUcGCG-GGACGaaacGCg -3'
miRNA:   3'- cCACGGCA--CGGUAuUGCuUCUGCc---CG- -5'
24657 3' -53.6 NC_005264.1 + 9657 0.66 0.972142
Target:  5'- aGUGCagaucgucuagCGagGCCuUGGgGGAGGCGGGCu -3'
miRNA:   3'- cCACG-----------GCa-CGGuAUUgCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 83157 0.66 0.977312
Target:  5'- uGGUGUC-UGUC---GCGggGAUGGGg -3'
miRNA:   3'- -CCACGGcACGGuauUGCuuCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 24315 0.66 0.97683
Target:  5'- cGGUGCCGagcguugaagggGCCGcAGUGAAcGGCGGGg -3'
miRNA:   3'- -CCACGGCa-----------CGGUaUUGCUU-CUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 31145 0.66 0.976586
Target:  5'- cGGacCCGUGCgGUucuagguuucguguGACGggGGCcggaGGGCg -3'
miRNA:   3'- -CCacGGCACGgUA--------------UUGCuuCUG----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 31032 0.66 0.972142
Target:  5'- cGGUGCCGccuagcgGUCGUGcggcugcguuGCGGAcGGCaGGCg -3'
miRNA:   3'- -CCACGGCa------CGGUAU----------UGCUU-CUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 103741 0.66 0.972142
Target:  5'- cGGcgGCC--GCCAUGcuuagguucauGCuGAGGCGGGCg -3'
miRNA:   3'- -CCa-CGGcaCGGUAU-----------UGcUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 80231 0.66 0.972142
Target:  5'- uGG-GCCGUG----GACGGAGAUaauGGGCa -3'
miRNA:   3'- -CCaCGGCACgguaUUGCUUCUG---CCCG- -5'
24657 3' -53.6 NC_005264.1 + 66474 0.66 0.972142
Target:  5'- --cGCCGcgGCCAgacucAAUGcuuGGCGGGCu -3'
miRNA:   3'- ccaCGGCa-CGGUa----UUGCuu-CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 56439 0.66 0.972142
Target:  5'- cGGUGCU-UGCCG--ACGuAGGCGGcGUa -3'
miRNA:   3'- -CCACGGcACGGUauUGCuUCUGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.