miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 95182 1.13 0.003006
Target:  5'- aGGUGCCGUGCCAUAACGAAGACGGGCc -3'
miRNA:   3'- -CCACGGCACGGUAUUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 44858 0.78 0.469527
Target:  5'- gGGUGCCGUcgagagaucugcaGCCu--GgGGAGGCGGGCc -3'
miRNA:   3'- -CCACGGCA-------------CGGuauUgCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 47775 0.76 0.535281
Target:  5'- gGGUGCCGaugGCCugcACGAAGACcucggcuuucgccgGGGCg -3'
miRNA:   3'- -CCACGGCa--CGGuauUGCUUCUG--------------CCCG- -5'
24657 3' -53.6 NC_005264.1 + 57368 0.75 0.609092
Target:  5'- gGGUGCCGUGU--UAACcuucGGugGGGCg -3'
miRNA:   3'- -CCACGGCACGguAUUGcu--UCugCCCG- -5'
24657 3' -53.6 NC_005264.1 + 120098 0.75 0.639844
Target:  5'- cGUGCCcaccggGUGCCGcgcaGAAGugGGGCg -3'
miRNA:   3'- cCACGG------CACGGUauugCUUCugCCCG- -5'
24657 3' -53.6 NC_005264.1 + 3611 0.74 0.650093
Target:  5'- --cGCCGcgggggGCC---GCGAGGGCGGGCg -3'
miRNA:   3'- ccaCGGCa-----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 122638 0.74 0.650093
Target:  5'- --cGCCGcgggggGCC---GCGAGGGCGGGCg -3'
miRNA:   3'- ccaCGGCa-----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 119264 0.74 0.660329
Target:  5'- cGUGCCuggcGCCAcAGCG-AGGCGGGCc -3'
miRNA:   3'- cCACGGca--CGGUaUUGCuUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 33966 0.74 0.660329
Target:  5'- cGGUGCCGcaagcUGuCCGcUGGCGAccAGAgCGGGCa -3'
miRNA:   3'- -CCACGGC-----AC-GGU-AUUGCU--UCU-GCCCG- -5'
24657 3' -53.6 NC_005264.1 + 237 0.74 0.660329
Target:  5'- cGUGCCuggcGCCAcAGCG-AGGCGGGCc -3'
miRNA:   3'- cCACGGca--CGGUaUUGCuUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 135114 0.74 0.670541
Target:  5'- gGGUGCCGUGCCGUucgcCGAAuuaugccccgcGACauccgucgucaGGGCg -3'
miRNA:   3'- -CCACGGCACGGUAuu--GCUU-----------CUG-----------CCCG- -5'
24657 3' -53.6 NC_005264.1 + 31835 0.74 0.670541
Target:  5'- -cUGCCGUGCCGcgcGCGGcaAGACauGGGCg -3'
miRNA:   3'- ccACGGCACGGUau-UGCU--UCUG--CCCG- -5'
24657 3' -53.6 NC_005264.1 + 150861 0.74 0.670541
Target:  5'- -cUGCCGUGCCGcgcGCGGcaAGACauGGGCg -3'
miRNA:   3'- ccACGGCACGGUau-UGCU--UCUG--CCCG- -5'
24657 3' -53.6 NC_005264.1 + 4217 0.73 0.720954
Target:  5'- gGGUGCCGcgUGCCAUAAUGAuuccaucucuGCGGaGCc -3'
miRNA:   3'- -CCACGGC--ACGGUAUUGCUuc--------UGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 93869 0.73 0.740647
Target:  5'- gGGUaGUCGUGCCGUGGC--AGGCcGGCg -3'
miRNA:   3'- -CCA-CGGCACGGUAUUGcuUCUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 22747 0.73 0.740647
Target:  5'- cGGUGCUGgGCgA-AGCGAuagcGGCGGGCa -3'
miRNA:   3'- -CCACGGCaCGgUaUUGCUu---CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 25144 0.72 0.750356
Target:  5'- --gGCCGaguaguugGCCGUGAgCGAGGACGuGGCc -3'
miRNA:   3'- ccaCGGCa-------CGGUAUU-GCUUCUGC-CCG- -5'
24657 3' -53.6 NC_005264.1 + 77279 0.72 0.750356
Target:  5'- cGGUGCCGcGCUcgAACGAauccaacgucAGcuucaggucGCGGGCg -3'
miRNA:   3'- -CCACGGCaCGGuaUUGCU----------UC---------UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 97524 0.72 0.759961
Target:  5'- -cUGCCGcgGCUGUGGCGuGGcaGCGGGCa -3'
miRNA:   3'- ccACGGCa-CGGUAUUGCuUC--UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 63918 0.72 0.769451
Target:  5'- --cGCCGUGCCGcGugGAAGAcaucuCGGuGCu -3'
miRNA:   3'- ccaCGGCACGGUaUugCUUCU-----GCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.