miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 66474 0.66 0.972142
Target:  5'- --cGCCGcgGCCAgacucAAUGcuuGGCGGGCu -3'
miRNA:   3'- ccaCGGCa-CGGUa----UUGCuu-CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 103741 0.66 0.972142
Target:  5'- cGGcgGCC--GCCAUGcuuagguucauGCuGAGGCGGGCg -3'
miRNA:   3'- -CCa-CGGcaCGGUAU-----------UGcUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 95464 0.66 0.96926
Target:  5'- --cGCCGgcgGgCGcAGCGAGcGCGGGCg -3'
miRNA:   3'- ccaCGGCa--CgGUaUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 70532 0.66 0.96926
Target:  5'- -cUGCUGUuCCuguacucGACGGAGACGuGGCa -3'
miRNA:   3'- ccACGGCAcGGua-----UUGCUUCUGC-CCG- -5'
24657 3' -53.6 NC_005264.1 + 110582 0.66 0.96926
Target:  5'- -aUGCCGUgGCCGgg-UGAguAGGCGGGg -3'
miRNA:   3'- ccACGGCA-CGGUauuGCU--UCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 153279 0.66 0.96926
Target:  5'- ---cCCG-GCUucuGUAGCGAGGcGCGGGCg -3'
miRNA:   3'- ccacGGCaCGG---UAUUGCUUC-UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 34252 0.66 0.96926
Target:  5'- ---cCCG-GCUucuGUAGCGAGGcGCGGGCg -3'
miRNA:   3'- ccacGGCaCGG---UAUUGCUUC-UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 139807 0.66 0.96926
Target:  5'- cGUGCCGUcgGCCGUcGCG-GGACGaaacGCg -3'
miRNA:   3'- cCACGGCA--CGGUAuUGCuUCUGCc---CG- -5'
24657 3' -53.6 NC_005264.1 + 135069 0.66 0.96926
Target:  5'- --gGUCGgcgGCCAUccguGgGAAGACGGGa -3'
miRNA:   3'- ccaCGGCa--CGGUAu---UgCUUCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 37649 0.66 0.96896
Target:  5'- cGUGCCccacaucGUGCac--GCGAugcgcGACGGGCg -3'
miRNA:   3'- cCACGG-------CACGguauUGCUu----CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 6214 0.66 0.966171
Target:  5'- -cUGuuGaacggGCCu--ACGGAGACGGGUu -3'
miRNA:   3'- ccACggCa----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 155275 0.66 0.966171
Target:  5'- cGGaGCCGca-CGUGGCGGAaGCGGGUa -3'
miRNA:   3'- -CCaCGGCacgGUAUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 36248 0.66 0.966171
Target:  5'- cGGaGCCGca-CGUGGCGGAaGCGGGUa -3'
miRNA:   3'- -CCaCGGCacgGUAUUGCUUcUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 66207 0.66 0.96585
Target:  5'- cGGUGCgccucCGcgGCCA--GCGAAGgacuuggcgagcuGCGGGCc -3'
miRNA:   3'- -CCACG-----GCa-CGGUauUGCUUC-------------UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 135678 0.66 0.96585
Target:  5'- --cGCCGUGaa--GACGGccugcacGGACGGGCc -3'
miRNA:   3'- ccaCGGCACgguaUUGCU-------UCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 150775 0.67 0.964216
Target:  5'- --aGCuCGUGCCAgaugauauuaugggGGCGu-GugGGGCa -3'
miRNA:   3'- ccaCG-GCACGGUa-------------UUGCuuCugCCCG- -5'
24657 3' -53.6 NC_005264.1 + 19425 0.67 0.96287
Target:  5'- aGGcGCCGggugugGCC---GCGggGcGCGGGUg -3'
miRNA:   3'- -CCaCGGCa-----CGGuauUGCuuC-UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 67270 0.67 0.96287
Target:  5'- --cGCUGUGgUAUAgacgacGCGAauGGGCGGGUa -3'
miRNA:   3'- ccaCGGCACgGUAU------UGCU--UCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 156676 0.67 0.96287
Target:  5'- cGUGCCccacacGUGCac--GCGAugcgcGACGGGCg -3'
miRNA:   3'- cCACGG------CACGguauUGCUu----CUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 142598 0.67 0.96287
Target:  5'- -aUGCCG-GCCGcGACGAuGGCcacgccGGGCu -3'
miRNA:   3'- ccACGGCaCGGUaUUGCUuCUG------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.