miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 237 0.74 0.660329
Target:  5'- cGUGCCuggcGCCAcAGCG-AGGCGGGCc -3'
miRNA:   3'- cCACGGca--CGGUaUUGCuUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 872 0.67 0.95561
Target:  5'- -uUGCCGcGCCcgGACGuacGACuGGGUg -3'
miRNA:   3'- ccACGGCaCGGuaUUGCuu-CUG-CCCG- -5'
24657 3' -53.6 NC_005264.1 + 3611 0.74 0.650093
Target:  5'- --cGCCGcgggggGCC---GCGAGGGCGGGCg -3'
miRNA:   3'- ccaCGGCa-----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 3682 0.67 0.951641
Target:  5'- uGGUGCgGgGCC-UGGCGcGGAaaGGGCg -3'
miRNA:   3'- -CCACGgCaCGGuAUUGCuUCUg-CCCG- -5'
24657 3' -53.6 NC_005264.1 + 3979 0.66 0.972142
Target:  5'- -aUGCUGUuaGCCGcuucGGCGgcGGCGGGUu -3'
miRNA:   3'- ccACGGCA--CGGUa---UUGCuuCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 4217 0.73 0.720954
Target:  5'- gGGUGCCGcgUGCCAUAAUGAuuccaucucuGCGGaGCc -3'
miRNA:   3'- -CCACGGC--ACGGUAUUGCUuc--------UGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 6214 0.66 0.966171
Target:  5'- -cUGuuGaacggGCCu--ACGGAGACGGGUu -3'
miRNA:   3'- ccACggCa----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 6486 0.69 0.917261
Target:  5'- gGGUGCgCG-GCCAU--CGAGGGCcGGUa -3'
miRNA:   3'- -CCACG-GCaCGGUAuuGCUUCUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 7260 0.7 0.878545
Target:  5'- cGGagGUCGgcGCCAgGACGAAGACggcgGGGCc -3'
miRNA:   3'- -CCa-CGGCa-CGGUaUUGCUUCUG----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 9657 0.66 0.972142
Target:  5'- aGUGCagaucgucuagCGagGCCuUGGgGGAGGCGGGCu -3'
miRNA:   3'- cCACG-----------GCa-CGGuAUUgCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 10107 0.68 0.933427
Target:  5'- --gGCCGUGuCCGUGACGuGGA--GGCa -3'
miRNA:   3'- ccaCGGCAC-GGUAUUGCuUCUgcCCG- -5'
24657 3' -53.6 NC_005264.1 + 10839 0.67 0.946135
Target:  5'- cGGUGUugauauaccucacuCGaGCCAagaucUGGCGAAGAUGGGa -3'
miRNA:   3'- -CCACG--------------GCaCGGU-----AUUGCUUCUGCCCg -5'
24657 3' -53.6 NC_005264.1 + 12280 0.68 0.928279
Target:  5'- -aUGCCGUaCCcUGGCGGcaGGGCGGuGCg -3'
miRNA:   3'- ccACGGCAcGGuAUUGCU--UCUGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 15380 0.69 0.905289
Target:  5'- cGGUGCCGcagugGCgAUAGCuuGAGGuuGGGUc -3'
miRNA:   3'- -CCACGGCa----CGgUAUUG--CUUCugCCCG- -5'
24657 3' -53.6 NC_005264.1 + 17996 0.69 0.898948
Target:  5'- --aGCCGgcaccgGCUcUGACGgcGGCGGGUc -3'
miRNA:   3'- ccaCGGCa-----CGGuAUUGCuuCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 18037 0.69 0.911394
Target:  5'- aGUG-CGUGCCGacGCGAAGcgGCGGcGCc -3'
miRNA:   3'- cCACgGCACGGUauUGCUUC--UGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 19425 0.67 0.96287
Target:  5'- aGGcGCCGggugugGCC---GCGggGcGCGGGUg -3'
miRNA:   3'- -CCaCGGCa-----CGGuauUGCuuC-UGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 19920 0.71 0.840212
Target:  5'- uGGcGCCGUGCCAguaccuCGAGGACGc-- -3'
miRNA:   3'- -CCaCGGCACGGUauu---GCUUCUGCccg -5'
24657 3' -53.6 NC_005264.1 + 19945 0.66 0.977312
Target:  5'- --nGCauCGUcGCCGUGAUGGAGAaaGGCg -3'
miRNA:   3'- ccaCG--GCA-CGGUAUUGCUUCUgcCCG- -5'
24657 3' -53.6 NC_005264.1 + 20353 0.68 0.938336
Target:  5'- --cGCCGUGCCA--GCGucGugGGa- -3'
miRNA:   3'- ccaCGGCACGGUauUGCuuCugCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.