miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 3' -53.6 NC_005264.1 + 95182 1.13 0.003006
Target:  5'- aGGUGCCGUGCCAUAACGAAGACGGGCc -3'
miRNA:   3'- -CCACGGCACGGUAUUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 18037 0.69 0.911394
Target:  5'- aGUG-CGUGCCGacGCGAAGcgGCGGcGCc -3'
miRNA:   3'- cCACgGCACGGUauUGCUUC--UGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 92992 0.68 0.928279
Target:  5'- --cGCCGcagcacgcgGCCGUAGCGggGGCagucaaGGCa -3'
miRNA:   3'- ccaCGGCa--------CGGUAUUGCuuCUGc-----CCG- -5'
24657 3' -53.6 NC_005264.1 + 98228 0.66 0.979615
Target:  5'- cGG-GCCGcGCU---GCGGAGAgguuaUGGGCg -3'
miRNA:   3'- -CCaCGGCaCGGuauUGCUUCU-----GCCCG- -5'
24657 3' -53.6 NC_005264.1 + 150861 0.74 0.670541
Target:  5'- -cUGCCGUGCCGcgcGCGGcaAGACauGGGCg -3'
miRNA:   3'- ccACGGCACGGUau-UGCU--UCUG--CCCG- -5'
24657 3' -53.6 NC_005264.1 + 4217 0.73 0.720954
Target:  5'- gGGUGCCGcgUGCCAUAAUGAuuccaucucuGCGGaGCc -3'
miRNA:   3'- -CCACGGC--ACGGUAUUGCUuc--------UGCC-CG- -5'
24657 3' -53.6 NC_005264.1 + 160088 0.72 0.788055
Target:  5'- cGGcGCCGggggacgcGCCGUuaAACcuaGAAGACGGGCc -3'
miRNA:   3'- -CCaCGGCa-------CGGUA--UUG---CUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 113008 0.71 0.818351
Target:  5'- cGGUGCCGUGUUuuguUGAUGAGcuuuuccgcggccgcGACuGGGCc -3'
miRNA:   3'- -CCACGGCACGGu---AUUGCUU---------------CUG-CCCG- -5'
24657 3' -53.6 NC_005264.1 + 153814 0.7 0.861554
Target:  5'- gGGUGagucuagaccgcauCCGUGUCAUGcGCGucgagugguAGGACGGGCc -3'
miRNA:   3'- -CCAC--------------GGCACGGUAU-UGC---------UUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 134743 0.69 0.897
Target:  5'- aGGcGCCgGUGCgCAauaacgccugacuuUGACGAAGACGGucGCa -3'
miRNA:   3'- -CCaCGG-CACG-GU--------------AUUGCUUCUGCC--CG- -5'
24657 3' -53.6 NC_005264.1 + 50031 0.7 0.863834
Target:  5'- -cUGCCGUGCCu---CGAGGuuGcGGCa -3'
miRNA:   3'- ccACGGCACGGuauuGCUUCugC-CCG- -5'
24657 3' -53.6 NC_005264.1 + 156133 0.7 0.856161
Target:  5'- aGGUGgUGgGCag-GACGAGGGCGaGGCg -3'
miRNA:   3'- -CCACgGCaCGguaUUGCUUCUGC-CCG- -5'
24657 3' -53.6 NC_005264.1 + 122638 0.74 0.650093
Target:  5'- --cGCCGcgggggGCC---GCGAGGGCGGGCg -3'
miRNA:   3'- ccaCGGCa-----CGGuauUGCUUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 126287 0.7 0.878545
Target:  5'- cGGagGUCGgcGCCAgGACGAAGACggcgGGGCc -3'
miRNA:   3'- -CCa-CGGCa-CGGUaUUGCUUCUG----CCCG- -5'
24657 3' -53.6 NC_005264.1 + 119264 0.74 0.660329
Target:  5'- cGUGCCuggcGCCAcAGCG-AGGCGGGCc -3'
miRNA:   3'- cCACGGca--CGGUaUUGCuUCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 19920 0.71 0.840212
Target:  5'- uGGcGCCGUGCCAguaccuCGAGGACGc-- -3'
miRNA:   3'- -CCaCGGCACGGUauu---GCUUCUGCccg -5'
24657 3' -53.6 NC_005264.1 + 51104 0.69 0.891033
Target:  5'- cGGUGCUGcggucugcucgcGCCucGACGcuGGCGGGCa -3'
miRNA:   3'- -CCACGGCa-----------CGGuaUUGCuuCUGCCCG- -5'
24657 3' -53.6 NC_005264.1 + 125513 0.69 0.917261
Target:  5'- gGGUGCgCG-GCCAU--CGAGGGCcGGUa -3'
miRNA:   3'- -CCACG-GCaCGGUAuuGCUUCUGcCCG- -5'
24657 3' -53.6 NC_005264.1 + 33966 0.74 0.660329
Target:  5'- cGGUGCCGcaagcUGuCCGcUGGCGAccAGAgCGGGCa -3'
miRNA:   3'- -CCACGGC-----AC-GGU-AUUGCU--UCU-GCCCG- -5'
24657 3' -53.6 NC_005264.1 + 22747 0.73 0.740647
Target:  5'- cGGUGCUGgGCgA-AGCGAuagcGGCGGGCa -3'
miRNA:   3'- -CCACGGCaCGgUaUUGCUu---CUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.