miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 5' -61.8 NC_005264.1 + 131581 0.66 0.689833
Target:  5'- gGCACCUg-GCGCCUagGUGUGGaggGAGCGg -3'
miRNA:   3'- -UGUGGGgaCGCGGG--CGCACCg--CUUGU- -5'
24657 5' -61.8 NC_005264.1 + 68237 0.66 0.680099
Target:  5'- cGCACCgCCaaGCcauGCCCGCGccGCGGGCGg -3'
miRNA:   3'- -UGUGG-GGa-CG---CGGGCGCacCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 12033 0.66 0.679123
Target:  5'- cCGCCCUUaggcgaaGCGCCCGCGaaccaucccgGuGCGAGCc -3'
miRNA:   3'- uGUGGGGA-------CGCGGGCGCa---------C-CGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 86489 0.66 0.679123
Target:  5'- aACGCgCCUGCGCgcagucgCCGCGcGGCcAACu -3'
miRNA:   3'- -UGUGgGGACGCG-------GGCGCaCCGcUUGu -5'
24657 5' -61.8 NC_005264.1 + 131060 0.66 0.679123
Target:  5'- cCGCCCUUaggcgaaGCGCCCGCGaaccaucccgGuGCGAGCc -3'
miRNA:   3'- uGUGGGGA-------CGCGGGCGCa---------C-CGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 123759 0.66 0.670328
Target:  5'- cGCugCCCgccgagccgGCGUCCGgG-GGUGGACc -3'
miRNA:   3'- -UGugGGGa--------CGCGGGCgCaCCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 68316 0.66 0.670328
Target:  5'- gGCGCCgCUGCccuCCCaCGUGGCcGACGg -3'
miRNA:   3'- -UGUGGgGACGc--GGGcGCACCGcUUGU- -5'
24657 5' -61.8 NC_005264.1 + 4733 0.66 0.670328
Target:  5'- cGCugCCCgccgagccgGCGUCCGgG-GGUGGACc -3'
miRNA:   3'- -UGugGGGa--------CGCGGGCgCaCCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 109887 0.66 0.660528
Target:  5'- aAUACCCCgcgGCGCaaugcgCCGCG-GGCGcGGCc -3'
miRNA:   3'- -UGUGGGGa--CGCG------GGCGCaCCGC-UUGu -5'
24657 5' -61.8 NC_005264.1 + 101031 0.66 0.650708
Target:  5'- cACugCCCgGCgauGCCCGCGgcccGGUGGAg- -3'
miRNA:   3'- -UGugGGGaCG---CGGGCGCa---CCGCUUgu -5'
24657 5' -61.8 NC_005264.1 + 137129 0.66 0.649725
Target:  5'- cGCACCgCUGcCGCCCGCGccaaagaUGGUcucaAACAu -3'
miRNA:   3'- -UGUGGgGAC-GCGGGCGC-------ACCGc---UUGU- -5'
24657 5' -61.8 NC_005264.1 + 9407 0.66 0.640873
Target:  5'- aGCGCCaaugaCUGCGCCUcauccaGCGaGGCGAuaACGu -3'
miRNA:   3'- -UGUGGg----GACGCGGG------CGCaCCGCU--UGU- -5'
24657 5' -61.8 NC_005264.1 + 15375 0.66 0.631033
Target:  5'- -aGCCCCgGUG-CCGCaGUGGCGAuaGCu -3'
miRNA:   3'- ugUGGGGaCGCgGGCG-CACCGCU--UGu -5'
24657 5' -61.8 NC_005264.1 + 148945 0.67 0.621193
Target:  5'- cGCGCCCC-GuCGCCUGCa-GGCGAcgACGc -3'
miRNA:   3'- -UGUGGGGaC-GCGGGCGcaCCGCU--UGU- -5'
24657 5' -61.8 NC_005264.1 + 87436 0.67 0.620209
Target:  5'- cACugCCC-GCGgCCGCGcagacggUGGCGcGCAc -3'
miRNA:   3'- -UGugGGGaCGCgGGCGC-------ACCGCuUGU- -5'
24657 5' -61.8 NC_005264.1 + 124817 0.67 0.610378
Target:  5'- uGCACCaCCgagGCGCCCacgGCGUucaauaguccggcGGCGGugGc -3'
miRNA:   3'- -UGUGG-GGa--CGCGGG---CGCA-------------CCGCUugU- -5'
24657 5' -61.8 NC_005264.1 + 5791 0.67 0.610378
Target:  5'- uGCACCaCCgagGCGCCCacgGCGUucaauaguccggcGGCGGugGc -3'
miRNA:   3'- -UGUGG-GGa--CGCGGG---CGCA-------------CCGCUugU- -5'
24657 5' -61.8 NC_005264.1 + 35812 0.67 0.601543
Target:  5'- gGCGCCUCUGCcggcCCCGCaaUGGCGGcccguGCAc -3'
miRNA:   3'- -UGUGGGGACGc---GGGCGc-ACCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 46428 0.67 0.601543
Target:  5'- cACGCcgCCCUGCGCUCGaCGUcGGCcuGCGg -3'
miRNA:   3'- -UGUG--GGGACGCGGGC-GCA-CCGcuUGU- -5'
24657 5' -61.8 NC_005264.1 + 154838 0.67 0.601543
Target:  5'- gGCGCCUCUGCcggcCCCGCaaUGGCGGcccguGCAc -3'
miRNA:   3'- -UGUGGGGACGc---GGGCGc-ACCGCU-----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.