miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 5' -61.8 NC_005264.1 + 95216 1.08 0.001115
Target:  5'- gACACCCCUGCGCCCGCGUGGCGAACAa -3'
miRNA:   3'- -UGUGGGGACGCGGGCGCACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 1001 0.78 0.128649
Target:  5'- -uGCCCC-GCGCCCGUGUGGUGGggggGCAg -3'
miRNA:   3'- ugUGGGGaCGCGGGCGCACCGCU----UGU- -5'
24657 5' -61.8 NC_005264.1 + 87107 0.72 0.348276
Target:  5'- cGCACCCagacuggccuccgGCGCCCGCGgGGCGcACc -3'
miRNA:   3'- -UGUGGGga-----------CGCGGGCGCaCCGCuUGu -5'
24657 5' -61.8 NC_005264.1 + 152536 0.71 0.383809
Target:  5'- uGCGCgUCgCUGCGCCCG-GUaGGCGAGCu -3'
miRNA:   3'- -UGUG-GG-GACGCGGGCgCA-CCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 33509 0.71 0.383809
Target:  5'- uGCGCgUCgCUGCGCCCG-GUaGGCGAGCu -3'
miRNA:   3'- -UGUG-GG-GACGCGGGCgCA-CCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 67378 0.71 0.391845
Target:  5'- cGCGCUCgCUGCGCCCGCc-GGCGcgguAGCGu -3'
miRNA:   3'- -UGUGGG-GACGCGGGCGcaCCGC----UUGU- -5'
24657 5' -61.8 NC_005264.1 + 86439 0.71 0.391845
Target:  5'- gGCGCCCUaUGUGCCaCGCccucgaGGCGAACAc -3'
miRNA:   3'- -UGUGGGG-ACGCGG-GCGca----CCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 12110 0.7 0.416602
Target:  5'- uACGCCCC-GCGCgCGaccuuUGGCGGGCAg -3'
miRNA:   3'- -UGUGGGGaCGCGgGCgc---ACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 131137 0.7 0.416602
Target:  5'- uACGCCCC-GCGCgCGaccuuUGGCGGGCAg -3'
miRNA:   3'- -UGUGGGGaCGCGgGCgc---ACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 79496 0.7 0.44229
Target:  5'- aGCACUCCUGCuCCUGaCGUG-CGGGCAc -3'
miRNA:   3'- -UGUGGGGACGcGGGC-GCACcGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 55134 0.69 0.46885
Target:  5'- gACACCCCgccGUGCgCUGUGcUGGCGcAGCGu -3'
miRNA:   3'- -UGUGGGGa--CGCG-GGCGC-ACCGC-UUGU- -5'
24657 5' -61.8 NC_005264.1 + 30353 0.69 0.46885
Target:  5'- aGCugCCCUGCGgCCaCGUGGCu---- -3'
miRNA:   3'- -UGugGGGACGCgGGcGCACCGcuugu -5'
24657 5' -61.8 NC_005264.1 + 71290 0.69 0.46885
Target:  5'- uGCcCCCCgccGCGCCCGauaUGcGCGAGCAu -3'
miRNA:   3'- -UGuGGGGa--CGCGGGCgc-AC-CGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 158101 0.69 0.496204
Target:  5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3'
miRNA:   3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 127308 0.69 0.496204
Target:  5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3'
miRNA:   3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 39074 0.69 0.496204
Target:  5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3'
miRNA:   3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 8281 0.69 0.496204
Target:  5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3'
miRNA:   3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 68900 0.69 0.496204
Target:  5'- cACACuCCgCUGCGCgCGaauGUGGCGAAg- -3'
miRNA:   3'- -UGUG-GG-GACGCGgGCg--CACCGCUUgu -5'
24657 5' -61.8 NC_005264.1 + 28847 0.68 0.512021
Target:  5'- -gGCCCCUGUagaacuuguauaugGaCCGCGcGGCGAACGc -3'
miRNA:   3'- ugUGGGGACG--------------CgGGCGCaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 6304 0.68 0.514834
Target:  5'- aGCugCaCUUGCGCggcgaggcuUCGCGUGGCGuACAc -3'
miRNA:   3'- -UGugG-GGACGCG---------GGCGCACCGCuUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.