miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 5' -61.8 NC_005264.1 + 66210 0.67 0.600562
Target:  5'- uGCGCCUCcGCGgCCaGCGaaggacuUGGCGAGCu -3'
miRNA:   3'- -UGUGGGGaCGCgGG-CGC-------ACCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 58310 0.67 0.581976
Target:  5'- cGCGCUUCgccgGCuGCCCGCGaaGGgGAACAa -3'
miRNA:   3'- -UGUGGGGa---CG-CGGGCGCa-CCgCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 58038 0.67 0.57224
Target:  5'- gGCGCCCgCUcgucucGCGaaagaggagaCUCGCGUGGUGGGCAu -3'
miRNA:   3'- -UGUGGG-GA------CGC----------GGGCGCACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 70672 0.67 0.571268
Target:  5'- gGCGCCgCCgGCaggcaauuuuuacGCCCGCG-GGCGAcaGCGc -3'
miRNA:   3'- -UGUGG-GGaCG-------------CGGGCGCaCCGCU--UGU- -5'
24657 5' -61.8 NC_005264.1 + 44765 0.68 0.562543
Target:  5'- uGCGCCCaaagGUGCCCGC--GGCGAuCGu -3'
miRNA:   3'- -UGUGGGga--CGCGGGCGcaCCGCUuGU- -5'
24657 5' -61.8 NC_005264.1 + 134885 0.68 0.559642
Target:  5'- cGCACCgUUguuuggaagacgcgGCGCCCGU-UGGCGAACu -3'
miRNA:   3'- -UGUGGgGA--------------CGCGGGCGcACCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 106167 0.68 0.543288
Target:  5'- aACACCUgUG-GCCCGCGUauGGCaucaGAGCGc -3'
miRNA:   3'- -UGUGGGgACgCGGGCGCA--CCG----CUUGU- -5'
24657 5' -61.8 NC_005264.1 + 83249 0.68 0.524255
Target:  5'- cCGCCgCUgaUGCGCUgGCGcGGCGAACu -3'
miRNA:   3'- uGUGG-GG--ACGCGGgCGCaCCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 96300 0.68 0.518594
Target:  5'- uGCGCCUCgGCGUCCGCGuUGcuguacugcgcgaaaGCGAGCu -3'
miRNA:   3'- -UGUGGGGaCGCGGGCGC-AC---------------CGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 33837 0.68 0.514834
Target:  5'- aGCuauuCCCCUGCGCgCCGC--GGCaGAGCu -3'
miRNA:   3'- -UGu---GGGGACGCG-GGCGcaCCG-CUUGu -5'
24657 5' -61.8 NC_005264.1 + 103946 0.68 0.514834
Target:  5'- gGCAUCCgcuaUGCGCgaaCGCGUGGCGcugcGCAa -3'
miRNA:   3'- -UGUGGGg---ACGCGg--GCGCACCGCu---UGU- -5'
24657 5' -61.8 NC_005264.1 + 6304 0.68 0.514834
Target:  5'- aGCugCaCUUGCGCggcgaggcuUCGCGUGGCGuACAc -3'
miRNA:   3'- -UGugG-GGACGCG---------GGCGCACCGCuUGU- -5'
24657 5' -61.8 NC_005264.1 + 28847 0.68 0.512021
Target:  5'- -gGCCCCUGUagaacuuguauaugGaCCGCGcGGCGAACGc -3'
miRNA:   3'- ugUGGGGACG--------------CgGGCGCaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 8281 0.69 0.496204
Target:  5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3'
miRNA:   3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 127308 0.69 0.496204
Target:  5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3'
miRNA:   3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 68900 0.69 0.496204
Target:  5'- cACACuCCgCUGCGCgCGaauGUGGCGAAg- -3'
miRNA:   3'- -UGUG-GG-GACGCGgGCg--CACCGCUUgu -5'
24657 5' -61.8 NC_005264.1 + 39074 0.69 0.496204
Target:  5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3'
miRNA:   3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 158101 0.69 0.496204
Target:  5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3'
miRNA:   3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 30353 0.69 0.46885
Target:  5'- aGCugCCCUGCGgCCaCGUGGCu---- -3'
miRNA:   3'- -UGugGGGACGCgGGcGCACCGcuugu -5'
24657 5' -61.8 NC_005264.1 + 71290 0.69 0.46885
Target:  5'- uGCcCCCCgccGCGCCCGauaUGcGCGAGCAu -3'
miRNA:   3'- -UGuGGGGa--CGCGGGCgc-AC-CGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.