miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24657 5' -61.8 NC_005264.1 + 1001 0.78 0.128649
Target:  5'- -uGCCCC-GCGCCCGUGUGGUGGggggGCAg -3'
miRNA:   3'- ugUGGGGaCGCGGGCGCACCGCU----UGU- -5'
24657 5' -61.8 NC_005264.1 + 4733 0.66 0.670328
Target:  5'- cGCugCCCgccgagccgGCGUCCGgG-GGUGGACc -3'
miRNA:   3'- -UGugGGGa--------CGCGGGCgCaCCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 5791 0.67 0.610378
Target:  5'- uGCACCaCCgagGCGCCCacgGCGUucaauaguccggcGGCGGugGc -3'
miRNA:   3'- -UGUGG-GGa--CGCGGG---CGCA-------------CCGCUugU- -5'
24657 5' -61.8 NC_005264.1 + 6304 0.68 0.514834
Target:  5'- aGCugCaCUUGCGCggcgaggcuUCGCGUGGCGuACAc -3'
miRNA:   3'- -UGugG-GGACGCG---------GGCGCACCGCuUGU- -5'
24657 5' -61.8 NC_005264.1 + 8281 0.69 0.496204
Target:  5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3'
miRNA:   3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 9407 0.66 0.640873
Target:  5'- aGCGCCaaugaCUGCGCCUcauccaGCGaGGCGAuaACGu -3'
miRNA:   3'- -UGUGGg----GACGCGGG------CGCaCCGCU--UGU- -5'
24657 5' -61.8 NC_005264.1 + 12033 0.66 0.679123
Target:  5'- cCGCCCUUaggcgaaGCGCCCGCGaaccaucccgGuGCGAGCc -3'
miRNA:   3'- uGUGGGGA-------CGCGGGCGCa---------C-CGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 12110 0.7 0.416602
Target:  5'- uACGCCCC-GCGCgCGaccuuUGGCGGGCAg -3'
miRNA:   3'- -UGUGGGGaCGCGgGCgc---ACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 15375 0.66 0.631033
Target:  5'- -aGCCCCgGUG-CCGCaGUGGCGAuaGCu -3'
miRNA:   3'- ugUGGGGaCGCgGGCG-CACCGCU--UGu -5'
24657 5' -61.8 NC_005264.1 + 28847 0.68 0.512021
Target:  5'- -gGCCCCUGUagaacuuguauaugGaCCGCGcGGCGAACGc -3'
miRNA:   3'- ugUGGGGACG--------------CgGGCGCaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 30353 0.69 0.46885
Target:  5'- aGCugCCCUGCGgCCaCGUGGCu---- -3'
miRNA:   3'- -UGugGGGACGCgGGcGCACCGcuugu -5'
24657 5' -61.8 NC_005264.1 + 33509 0.71 0.383809
Target:  5'- uGCGCgUCgCUGCGCCCG-GUaGGCGAGCu -3'
miRNA:   3'- -UGUG-GG-GACGCGGGCgCA-CCGCUUGu -5'
24657 5' -61.8 NC_005264.1 + 33837 0.68 0.514834
Target:  5'- aGCuauuCCCCUGCGCgCCGC--GGCaGAGCu -3'
miRNA:   3'- -UGu---GGGGACGCG-GGCGcaCCG-CUUGu -5'
24657 5' -61.8 NC_005264.1 + 35812 0.67 0.601543
Target:  5'- gGCGCCUCUGCcggcCCCGCaaUGGCGGcccguGCAc -3'
miRNA:   3'- -UGUGGGGACGc---GGGCGc-ACCGCU-----UGU- -5'
24657 5' -61.8 NC_005264.1 + 39074 0.69 0.496204
Target:  5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3'
miRNA:   3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 44765 0.68 0.562543
Target:  5'- uGCGCCCaaagGUGCCCGC--GGCGAuCGu -3'
miRNA:   3'- -UGUGGGga--CGCGGGCGcaCCGCUuGU- -5'
24657 5' -61.8 NC_005264.1 + 46428 0.67 0.601543
Target:  5'- cACGCcgCCCUGCGCUCGaCGUcGGCcuGCGg -3'
miRNA:   3'- -UGUG--GGGACGCGGGC-GCA-CCGcuUGU- -5'
24657 5' -61.8 NC_005264.1 + 55134 0.69 0.46885
Target:  5'- gACACCCCgccGUGCgCUGUGcUGGCGcAGCGu -3'
miRNA:   3'- -UGUGGGGa--CGCG-GGCGC-ACCGC-UUGU- -5'
24657 5' -61.8 NC_005264.1 + 58038 0.67 0.57224
Target:  5'- gGCGCCCgCUcgucucGCGaaagaggagaCUCGCGUGGUGGGCAu -3'
miRNA:   3'- -UGUGGG-GA------CGC----------GGGCGCACCGCUUGU- -5'
24657 5' -61.8 NC_005264.1 + 58310 0.67 0.581976
Target:  5'- cGCGCUUCgccgGCuGCCCGCGaaGGgGAACAa -3'
miRNA:   3'- -UGUGGGGa---CG-CGGGCGCa-CCgCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.