Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24657 | 5' | -61.8 | NC_005264.1 | + | 1001 | 0.78 | 0.128649 |
Target: 5'- -uGCCCC-GCGCCCGUGUGGUGGggggGCAg -3' miRNA: 3'- ugUGGGGaCGCGGGCGCACCGCU----UGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 134885 | 0.68 | 0.559642 |
Target: 5'- cGCACCgUUguuuggaagacgcgGCGCCCGU-UGGCGAACu -3' miRNA: 3'- -UGUGGgGA--------------CGCGGGCGcACCGCUUGu -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 58038 | 0.67 | 0.57224 |
Target: 5'- gGCGCCCgCUcgucucGCGaaagaggagaCUCGCGUGGUGGGCAu -3' miRNA: 3'- -UGUGGG-GA------CGC----------GGGCGCACCGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 68237 | 0.66 | 0.680099 |
Target: 5'- cGCACCgCCaaGCcauGCCCGCGccGCGGGCGg -3' miRNA: 3'- -UGUGG-GGa-CG---CGGGCGCacCGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 79496 | 0.7 | 0.44229 |
Target: 5'- aGCACUCCUGCuCCUGaCGUG-CGGGCAc -3' miRNA: 3'- -UGUGGGGACGcGGGC-GCACcGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 55134 | 0.69 | 0.46885 |
Target: 5'- gACACCCCgccGUGCgCUGUGcUGGCGcAGCGu -3' miRNA: 3'- -UGUGGGGa--CGCG-GGCGC-ACCGC-UUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 30353 | 0.69 | 0.46885 |
Target: 5'- aGCugCCCUGCGgCCaCGUGGCu---- -3' miRNA: 3'- -UGugGGGACGCgGGcGCACCGcuugu -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 127308 | 0.69 | 0.496204 |
Target: 5'- aACGCCaacaagGCGCCCGUG-GGCGAcggggGCAc -3' miRNA: 3'- -UGUGGgga---CGCGGGCGCaCCGCU-----UGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 6304 | 0.68 | 0.514834 |
Target: 5'- aGCugCaCUUGCGCggcgaggcuUCGCGUGGCGuACAc -3' miRNA: 3'- -UGugG-GGACGCG---------GGCGCACCGCuUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 106167 | 0.68 | 0.543288 |
Target: 5'- aACACCUgUG-GCCCGCGUauGGCaucaGAGCGc -3' miRNA: 3'- -UGUGGGgACgCGGGCGCA--CCG----CUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 33837 | 0.68 | 0.514834 |
Target: 5'- aGCuauuCCCCUGCGCgCCGC--GGCaGAGCu -3' miRNA: 3'- -UGu---GGGGACGCG-GGCGcaCCG-CUUGu -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 28847 | 0.68 | 0.512021 |
Target: 5'- -gGCCCCUGUagaacuuguauaugGaCCGCGcGGCGAACGc -3' miRNA: 3'- ugUGGGGACG--------------CgGGCGCaCCGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 152536 | 0.71 | 0.383809 |
Target: 5'- uGCGCgUCgCUGCGCCCG-GUaGGCGAGCu -3' miRNA: 3'- -UGUG-GG-GACGCGGGCgCA-CCGCUUGu -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 103946 | 0.68 | 0.514834 |
Target: 5'- gGCAUCCgcuaUGCGCgaaCGCGUGGCGcugcGCAa -3' miRNA: 3'- -UGUGGGg---ACGCGg--GCGCACCGCu---UGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 67378 | 0.71 | 0.391845 |
Target: 5'- cGCGCUCgCUGCGCCCGCc-GGCGcgguAGCGu -3' miRNA: 3'- -UGUGGG-GACGCGGGCGcaCCGC----UUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 158101 | 0.69 | 0.496204 |
Target: 5'- cCACCCCcgGaCGCCgGCucGGCGGGCAg -3' miRNA: 3'- uGUGGGGa-C-GCGGgCGcaCCGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 96300 | 0.68 | 0.518594 |
Target: 5'- uGCGCCUCgGCGUCCGCGuUGcuguacugcgcgaaaGCGAGCu -3' miRNA: 3'- -UGUGGGGaCGCGGGCGC-AC---------------CGCUUGu -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 70672 | 0.67 | 0.571268 |
Target: 5'- gGCGCCgCCgGCaggcaauuuuuacGCCCGCG-GGCGAcaGCGc -3' miRNA: 3'- -UGUGG-GGaCG-------------CGGGCGCaCCGCU--UGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 131137 | 0.7 | 0.416602 |
Target: 5'- uACGCCCC-GCGCgCGaccuuUGGCGGGCAg -3' miRNA: 3'- -UGUGGGGaCGCGgGCgc---ACCGCUUGU- -5' |
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24657 | 5' | -61.8 | NC_005264.1 | + | 71290 | 0.69 | 0.46885 |
Target: 5'- uGCcCCCCgccGCGCCCGauaUGcGCGAGCAu -3' miRNA: 3'- -UGuGGGGa--CGCGGGCgc-AC-CGCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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