Results 61 - 80 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 140781 | 0.67 | 0.682273 |
Target: 5'- uCCGGC-GGCGGCGCua-CCGuCCAAGg -3' miRNA: 3'- -GGCUGcCCGCCGCGcacGGC-GGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 156701 | 0.67 | 0.633629 |
Target: 5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3' miRNA: 3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 131040 | 0.67 | 0.662876 |
Target: 5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3' miRNA: 3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 157012 | 0.67 | 0.672589 |
Target: 5'- gCCaGGCGaguGGCGGCcaccGCCGCCGGACu -3' miRNA: 3'- -GG-CUGC---CCGCCGcgcaCGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 150226 | 0.67 | 0.682273 |
Target: 5'- -gGACGGGgGGCuGCG-GCCcuCCAGAg -3' miRNA: 3'- ggCUGCCCgCCG-CGCaCGGc-GGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 18044 | 0.67 | 0.653139 |
Target: 5'- gCCGACGcgaagcGGCGGCGCc-GCgaGCCAGGg -3' miRNA: 3'- -GGCUGC------CCGCCGCGcaCGg-CGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 35499 | 0.67 | 0.642412 |
Target: 5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3' miRNA: 3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 139744 | 0.67 | 0.636557 |
Target: 5'- -aGGCGGGCGGCagacaacGCGggacaUGCCGgcgucucccgguaccCCAAGCa -3' miRNA: 3'- ggCUGCCCGCCG-------CGC-----ACGGC---------------GGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 45783 | 0.67 | 0.643388 |
Target: 5'- gCGcCGGaGCGGCuauuGCGgucuggGCCGCCGcGCu -3' miRNA: 3'- gGCuGCC-CGCCG----CGCa-----CGGCGGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 5143 | 0.67 | 0.6307 |
Target: 5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3' miRNA: 3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 2897 | 0.67 | 0.64729 |
Target: 5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3' miRNA: 3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 157690 | 0.67 | 0.653139 |
Target: 5'- uCgGACGauGCGGCGCG-GCCGCgCAu-- -3' miRNA: 3'- -GgCUGCc-CGCCGCGCaCGGCG-GUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 102879 | 0.67 | 0.657036 |
Target: 5'- gCGugGcugaGCGGCGCGgacaccaugauaaCCGCCGAGCu -3' miRNA: 3'- gGCugCc---CGCCGCGCac-----------GGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 3739 | 0.67 | 0.662876 |
Target: 5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3' miRNA: 3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 12013 | 0.67 | 0.662876 |
Target: 5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3' miRNA: 3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 37985 | 0.67 | 0.672589 |
Target: 5'- gCCaGGCGaguGGCGGCcaccGCCGCCGGACu -3' miRNA: 3'- -GG-CUGC---CCGCCGcgcaCGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 39813 | 0.67 | 0.672589 |
Target: 5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3' miRNA: 3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 37675 | 0.67 | 0.633629 |
Target: 5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3' miRNA: 3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 121923 | 0.67 | 0.64729 |
Target: 5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3' miRNA: 3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 52206 | 0.67 | 0.643388 |
Target: 5'- gCCGugGGGCgcgguGGCGCGaGCugguaCGCCuugaAAGCg -3' miRNA: 3'- -GGCugCCCG-----CCGCGCaCG-----GCGG----UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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