miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 31199 0.67 0.682273
Target:  5'- -gGACGGGgGGCuGCG-GCCcuCCAGAg -3'
miRNA:   3'- ggCUGCCCgCCG-CGCaCGGc-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 114474 0.67 0.682273
Target:  5'- cUCGACGcGGCacuGCGCaacgagGCCGCCAuGGCg -3'
miRNA:   3'- -GGCUGC-CCGc--CGCGca----CGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 140781 0.67 0.682273
Target:  5'- uCCGGC-GGCGGCGCua-CCGuCCAAGg -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGC-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 5143 0.67 0.6307
Target:  5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3'
miRNA:   3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 158839 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 39813 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 20133 0.68 0.614113
Target:  5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3'
miRNA:   3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 4439 0.68 0.57528
Target:  5'- gUGACGGGCGGCGgGcauauacgGCUcccauaggcgagGCUAAGCg -3'
miRNA:   3'- gGCUGCCCGCCGCgCa-------CGG------------CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 157942 0.68 0.572387
Target:  5'- aCGGCGGccaGCGuggccucgaacuccGCGUGUcgcuuGCCGCCAAGCu -3'
miRNA:   3'- gGCUGCC---CGC--------------CGCGCA-----CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 32386 0.68 0.584948
Target:  5'- gCCGGCGGcCGGCGUccGCCGC--GACu -3'
miRNA:   3'- -GGCUGCCcGCCGCGcaCGGCGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 87595 0.68 0.584948
Target:  5'- aCGGCGcGUGGuCGCGUuauacaagacgGCCGCCGcGCa -3'
miRNA:   3'- gGCUGCcCGCC-GCGCA-----------CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 31970 0.68 0.594647
Target:  5'- gCGACGGGCcGCGUGUccgauGCgCGCUAcAGCg -3'
miRNA:   3'- gGCUGCCCGcCGCGCA-----CG-GCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 6868 0.68 0.594647
Target:  5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3'
miRNA:   3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 31793 0.68 0.594647
Target:  5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3'
miRNA:   3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 162234 0.68 0.601451
Target:  5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3'
miRNA:   3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 91909 0.68 0.614113
Target:  5'- gCGAUGGGCgGGCGCG-G-CGaCCAuACa -3'
miRNA:   3'- gGCUGCCCG-CCGCGCaCgGC-GGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 51339 0.68 0.594647
Target:  5'- aUGA-GGGCGG-GUGUcGCCGCCGAc- -3'
miRNA:   3'- gGCUgCCCGCCgCGCA-CGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 134972 0.68 0.594647
Target:  5'- aCGACaaaaaGGCGGCgGCGcauugggcggaUGCCGCCGcGACa -3'
miRNA:   3'- gGCUGc----CCGCCG-CGC-----------ACGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 43207 0.68 0.601451
Target:  5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3'
miRNA:   3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 129605 0.68 0.604371
Target:  5'- gCGGCGcGGCGGCGaa-GCuucucgaguagaCGCCGAGCg -3'
miRNA:   3'- gGCUGC-CCGCCGCgcaCG------------GCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.