Results 101 - 120 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 31793 | 0.68 | 0.594647 |
Target: 5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3' miRNA: 3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 51339 | 0.68 | 0.594647 |
Target: 5'- aUGA-GGGCGG-GUGUcGCCGCCGAc- -3' miRNA: 3'- gGCUgCCCGCCgCGCA-CGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 134972 | 0.68 | 0.594647 |
Target: 5'- aCGACaaaaaGGCGGCgGCGcauugggcggaUGCCGCCGcGACa -3' miRNA: 3'- gGCUGc----CCGCCG-CGC-----------ACGGCGGU-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 43207 | 0.68 | 0.601451 |
Target: 5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3' miRNA: 3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 150819 | 0.68 | 0.594647 |
Target: 5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3' miRNA: 3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 129605 | 0.68 | 0.604371 |
Target: 5'- gCGGCGcGGCGGCGaa-GCuucucgaguagaCGCCGAGCg -3' miRNA: 3'- gGCUGC-CCGCCGCgcaCG------------GCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 20133 | 0.68 | 0.614113 |
Target: 5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3' miRNA: 3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 42256 | 0.69 | 0.564689 |
Target: 5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3' miRNA: 3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 52554 | 0.69 | 0.556061 |
Target: 5'- aUCGAuggaaUGGGCGGUGCGgauggcacgGCUGCCuacGCg -3' miRNA: 3'- -GGCU-----GCCCGCCGCGCa--------CGGCGGuu-UG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 91562 | 0.69 | 0.54652 |
Target: 5'- gCGGCGGGgGGCacgagGCuUGUCGCgGAGCu -3' miRNA: 3'- gGCUGCCCgCCG-----CGcACGGCGgUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 106244 | 0.69 | 0.518233 |
Target: 5'- cCCaGAUGGGCcGCGCGUagCGCCAGAa -3' miRNA: 3'- -GG-CUGCCCGcCGCGCAcgGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 95465 | 0.69 | 0.527601 |
Target: 5'- gCCGGCGGGCGcagcgaGCGCG-GgCGCUAc-- -3' miRNA: 3'- -GGCUGCCCGC------CGCGCaCgGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 99393 | 0.69 | 0.56565 |
Target: 5'- aCGGCGGaGCGGgGUaUGCCaGgCAAGCg -3' miRNA: 3'- gGCUGCC-CGCCgCGcACGG-CgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 43641 | 0.69 | 0.569497 |
Target: 5'- gCCGGCGaGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3' miRNA: 3'- -GGCUGC-CCG---------------CCGCGC-ACG-GCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 124835 | 0.69 | 0.54652 |
Target: 5'- aCGGCGuucaauaguccGGCGGCG-GUgGCCGCCAcuCg -3' miRNA: 3'- gGCUGC-----------CCGCCGCgCA-CGGCGGUuuG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 22050 | 0.69 | 0.556061 |
Target: 5'- aCCGACGccuuGGaCGGUaGCGccGCCGCCGGAa -3' miRNA: 3'- -GGCUGC----CC-GCCG-CGCa-CGGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 60847 | 0.69 | 0.54652 |
Target: 5'- gCGuCGGcGuCGGCGCGUGCgCGgCAAAg -3' miRNA: 3'- gGCuGCC-C-GCCGCGCACG-GCgGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 40972 | 0.69 | 0.54652 |
Target: 5'- gCGACGGcGCGaGCGCGaccgGCCcuccGCCAAc- -3' miRNA: 3'- gGCUGCC-CGC-CGCGCa---CGG----CGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 161283 | 0.69 | 0.564689 |
Target: 5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3' miRNA: 3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 145166 | 0.69 | 0.537032 |
Target: 5'- gCUGACGaGcCGGCGUGacucugaguUGCCGCUAGGCc -3' miRNA: 3'- -GGCUGCcC-GCCGCGC---------ACGGCGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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