miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 72251 0.7 0.463566
Target:  5'- aCCG-CGGGCaaGGCGCGaccUGCCGCg---- -3'
miRNA:   3'- -GGCuGCCCG--CCGCGC---ACGGCGguuug -5'
24658 3' -61.2 NC_005264.1 + 146671 0.7 0.463566
Target:  5'- aCCGACcuccgcgcaGGGCGGCau-UGCCGCCcuGCg -3'
miRNA:   3'- -GGCUG---------CCCGCCGcgcACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 58365 0.7 0.463566
Target:  5'- uCUGGCGGGgcCGGCGCGauaUGC-GCCGGAUu -3'
miRNA:   3'- -GGCUGCCC--GCCGCGC---ACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 110147 0.7 0.490546
Target:  5'- -gGGCGGGCGGCGaaacCCGCCGcGGCu -3'
miRNA:   3'- ggCUGCCCGCCGCgcacGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 149879 0.7 0.499701
Target:  5'- gUCGGC-GGCGGCGC--GCCGCCcgguAGGCa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcaCGGCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 131639 0.7 0.469793
Target:  5'- -aGAUGGucacgccucggucuGCGGUGCccGCCGCCAGACc -3'
miRNA:   3'- ggCUGCC--------------CGCCGCGcaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 81901 0.7 0.499701
Target:  5'- gCGAUGGGCGG-GCGaGCCaGCaGAACg -3'
miRNA:   3'- gGCUGCCCGCCgCGCaCGG-CGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 125281 0.7 0.499701
Target:  5'- cCCucCGcGGCGGCGCGcUGUCGCUucGCc -3'
miRNA:   3'- -GGcuGC-CCGCCGCGC-ACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 99897 0.7 0.508931
Target:  5'- cCCGAacaaaaGGcGCGGCuuGCG-GCCGCgCAAGCc -3'
miRNA:   3'- -GGCUg-----CC-CGCCG--CGCaCGGCG-GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 70661 0.7 0.508931
Target:  5'- aCCGugGccGCGGCGCc-GCCGgCAGGCa -3'
miRNA:   3'- -GGCugCc-CGCCGCGcaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 56826 0.7 0.508931
Target:  5'- gCGGCGGcccuagcuaGCGGCuCGUgGCUGCCAGAUu -3'
miRNA:   3'- gGCUGCC---------CGCCGcGCA-CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 30853 0.7 0.499701
Target:  5'- gUCGGC-GGCGGCGC--GCCGCCcgguAGGCa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcaCGGCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 40972 0.69 0.54652
Target:  5'- gCGACGGcGCGaGCGCGaccgGCCcuccGCCAAc- -3'
miRNA:   3'- gGCUGCC-CGC-CGCGCa---CGG----CGGUUug -5'
24658 3' -61.2 NC_005264.1 + 52554 0.69 0.556061
Target:  5'- aUCGAuggaaUGGGCGGUGCGgauggcacgGCUGCCuacGCg -3'
miRNA:   3'- -GGCU-----GCCCGCCGCGCa--------CGGCGGuu-UG- -5'
24658 3' -61.2 NC_005264.1 + 133541 0.69 0.556061
Target:  5'- cCUGuaACGGGCGGCGUGagguaccgGCUcCCGGACa -3'
miRNA:   3'- -GGC--UGCCCGCCGCGCa-------CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 106244 0.69 0.518233
Target:  5'- cCCaGAUGGGCcGCGCGUagCGCCAGAa -3'
miRNA:   3'- -GG-CUGCCCGcCGCGCAcgGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 5809 0.69 0.54652
Target:  5'- aCGGCGuucaauaguccGGCGGCG-GUgGCCGCCAcuCg -3'
miRNA:   3'- gGCUGC-----------CCGCCGCgCA-CGGCGGUuuG- -5'
24658 3' -61.2 NC_005264.1 + 105654 0.69 0.556061
Target:  5'- --cACGGGCGGCGCuuUGCCGgcggCAGACc -3'
miRNA:   3'- ggcUGCCCGCCGCGc-ACGGCg---GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 91562 0.69 0.54652
Target:  5'- gCGGCGGGgGGCacgagGCuUGUCGCgGAGCu -3'
miRNA:   3'- gGCUGCCCgCCG-----CGcACGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 95465 0.69 0.527601
Target:  5'- gCCGGCGGGCGcagcgaGCGCG-GgCGCUAc-- -3'
miRNA:   3'- -GGCUGCCCGC------CGCGCaCgGCGGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.