miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 60847 0.69 0.54652
Target:  5'- gCGuCGGcGuCGGCGCGUGCgCGgCAAAg -3'
miRNA:   3'- gGCuGCC-C-GCCGCGCACG-GCgGUUUg -5'
24658 3' -61.2 NC_005264.1 + 22050 0.69 0.556061
Target:  5'- aCCGACGccuuGGaCGGUaGCGccGCCGCCGGAa -3'
miRNA:   3'- -GGCUGC----CC-GCCG-CGCa-CGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 116665 0.69 0.556061
Target:  5'- -aGAU-GGCGGgGCG-GCCGCCGAu- -3'
miRNA:   3'- ggCUGcCCGCCgCGCaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 105654 0.69 0.556061
Target:  5'- --cACGGGCGGCGCuuUGCCGgcggCAGACc -3'
miRNA:   3'- ggcUGCCCGCCGCGc-ACGGCg---GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 52554 0.69 0.556061
Target:  5'- aUCGAuggaaUGGGCGGUGCGgauggcacgGCUGCCuacGCg -3'
miRNA:   3'- -GGCU-----GCCCGCCGCGCa--------CGGCGGuu-UG- -5'
24658 3' -61.2 NC_005264.1 + 133541 0.69 0.556061
Target:  5'- cCUGuaACGGGCGGCGUGagguaccgGCUcCCGGACa -3'
miRNA:   3'- -GGC--UGCCCGCCGCGCa-------CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 42256 0.69 0.564689
Target:  5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3'
miRNA:   3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 161283 0.69 0.564689
Target:  5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3'
miRNA:   3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 99393 0.69 0.56565
Target:  5'- aCGGCGGaGCGGgGUaUGCCaGgCAAGCg -3'
miRNA:   3'- gGCUGCC-CGCCgCGcACGG-CgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43641 0.69 0.569497
Target:  5'- gCCGGCGaGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGC-CCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 157942 0.68 0.572387
Target:  5'- aCGGCGGccaGCGuggccucgaacuccGCGUGUcgcuuGCCGCCAAGCu -3'
miRNA:   3'- gGCUGCC---CGC--------------CGCGCA-----CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 4439 0.68 0.57528
Target:  5'- gUGACGGGCGGCGgGcauauacgGCUcccauaggcgagGCUAAGCg -3'
miRNA:   3'- gGCUGCCCGCCGCgCa-------CGG------------CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 151413 0.68 0.584948
Target:  5'- gCCGGCGGcCGGCGUccGCCGC--GACu -3'
miRNA:   3'- -GGCUGCCcGCCGCGcaCGGCGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 147537 0.68 0.584948
Target:  5'- gCGAuaCGGaaucuuucccGCGGCGCGaagugGCCGCCGAc- -3'
miRNA:   3'- gGCU--GCC----------CGCCGCGCa----CGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 32386 0.68 0.584948
Target:  5'- gCCGGCGGcCGGCGUccGCCGC--GACu -3'
miRNA:   3'- -GGCUGCCcGCCGCGcaCGGCGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 87595 0.68 0.584948
Target:  5'- aCGGCGcGUGGuCGCGUuauacaagacgGCCGCCGcGCa -3'
miRNA:   3'- gGCUGCcCGCC-GCGCA-----------CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 49489 0.68 0.591734
Target:  5'- uUCGACGGGCagcaGGUGCGcgucuucacgugccUGCUGCagaGGGCg -3'
miRNA:   3'- -GGCUGCCCG----CCGCGC--------------ACGGCGg--UUUG- -5'
24658 3' -61.2 NC_005264.1 + 31793 0.68 0.594647
Target:  5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3'
miRNA:   3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 6868 0.68 0.594647
Target:  5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3'
miRNA:   3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 31970 0.68 0.594647
Target:  5'- gCGACGGGCcGCGUGUccgauGCgCGCUAcAGCg -3'
miRNA:   3'- gGCUGCCCGcCGCGCA-----CG-GCGGU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.