Results 81 - 100 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 31970 | 0.68 | 0.594647 |
Target: 5'- gCGACGGGCcGCGUGUccgauGCgCGCUAcAGCg -3' miRNA: 3'- gGCUGCCCGcCGCGCA-----CG-GCGGU-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 134972 | 0.68 | 0.594647 |
Target: 5'- aCGACaaaaaGGCGGCgGCGcauugggcggaUGCCGCCGcGACa -3' miRNA: 3'- gGCUGc----CCGCCG-CGC-----------ACGGCGGU-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 6868 | 0.68 | 0.594647 |
Target: 5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3' miRNA: 3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 31793 | 0.68 | 0.594647 |
Target: 5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3' miRNA: 3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 51339 | 0.68 | 0.594647 |
Target: 5'- aUGA-GGGCGG-GUGUcGCCGCCGAc- -3' miRNA: 3'- gGCUgCCCGCCgCGCA-CGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 162234 | 0.68 | 0.601451 |
Target: 5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3' miRNA: 3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 43207 | 0.68 | 0.601451 |
Target: 5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3' miRNA: 3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 129605 | 0.68 | 0.604371 |
Target: 5'- gCGGCGcGGCGGCGaa-GCuucucgaguagaCGCCGAGCg -3' miRNA: 3'- gGCUGC-CCGCCGCgcaCG------------GCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 91909 | 0.68 | 0.614113 |
Target: 5'- gCGAUGGGCgGGCGCG-G-CGaCCAuACa -3' miRNA: 3'- gGCUGCCCG-CCGCGCaCgGC-GGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 20133 | 0.68 | 0.614113 |
Target: 5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3' miRNA: 3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 84765 | 0.68 | 0.623868 |
Target: 5'- aCGACGGGCaGCGCGgaGCUauaGauaCAGACg -3' miRNA: 3'- gGCUGCCCGcCGCGCa-CGG---Cg--GUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 5143 | 0.67 | 0.6307 |
Target: 5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3' miRNA: 3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 124170 | 0.67 | 0.6307 |
Target: 5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3' miRNA: 3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 37675 | 0.67 | 0.633629 |
Target: 5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3' miRNA: 3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 156701 | 0.67 | 0.633629 |
Target: 5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3' miRNA: 3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 139744 | 0.67 | 0.636557 |
Target: 5'- -aGGCGGGCGGCagacaacGCGggacaUGCCGgcgucucccgguaccCCAAGCa -3' miRNA: 3'- ggCUGCCCGCCG-------CGC-----ACGGC---------------GGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 154526 | 0.67 | 0.642412 |
Target: 5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3' miRNA: 3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 35499 | 0.67 | 0.642412 |
Target: 5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3' miRNA: 3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 45783 | 0.67 | 0.643388 |
Target: 5'- gCGcCGGaGCGGCuauuGCGgucuggGCCGCCGcGCu -3' miRNA: 3'- gGCuGCC-CGCCG----CGCa-----CGGCGGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 52206 | 0.67 | 0.643388 |
Target: 5'- gCCGugGGGCgcgguGGCGCGaGCugguaCGCCuugaAAGCg -3' miRNA: 3'- -GGCugCCCG-----CCGCGCaCG-----GCGG----UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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