miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 114474 0.67 0.682273
Target:  5'- cUCGACGcGGCacuGCGCaacgagGCCGCCAuGGCg -3'
miRNA:   3'- -GGCUGC-CCGc--CGCGca----CGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 139114 0.67 0.672589
Target:  5'- gCUGAgcGGCGGCGUGUGCC-CUuuGGGCg -3'
miRNA:   3'- -GGCUgcCCGCCGCGCACGGcGG--UUUG- -5'
24658 3' -61.2 NC_005264.1 + 158839 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 157012 0.67 0.672589
Target:  5'- gCCaGGCGaguGGCGGCcaccGCCGCCGGACu -3'
miRNA:   3'- -GG-CUGC---CCGCCGcgcaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 39813 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 37985 0.67 0.672589
Target:  5'- gCCaGGCGaguGGCGGCcaccGCCGCCGGACu -3'
miRNA:   3'- -GG-CUGC---CCGCCGcgcaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 22841 0.67 0.671619
Target:  5'- -aGACGGGUacggacgGGCGag-GCCGCgCGAACc -3'
miRNA:   3'- ggCUGCCCG-------CCGCgcaCGGCG-GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 122765 0.67 0.662876
Target:  5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3'
miRNA:   3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 131040 0.67 0.662876
Target:  5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3'
miRNA:   3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 12013 0.67 0.662876
Target:  5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3'
miRNA:   3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 3739 0.67 0.662876
Target:  5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3'
miRNA:   3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 102879 0.67 0.657036
Target:  5'- gCGugGcugaGCGGCGCGgacaccaugauaaCCGCCGAGCu -3'
miRNA:   3'- gGCugCc---CGCCGCGCac-----------GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 18044 0.67 0.653139
Target:  5'- gCCGACGcgaagcGGCGGCGCc-GCgaGCCAGGg -3'
miRNA:   3'- -GGCUGC------CCGCCGCGcaCGg-CGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 157690 0.67 0.653139
Target:  5'- uCgGACGauGCGGCGCG-GCCGCgCAu-- -3'
miRNA:   3'- -GgCUGCc-CGCCGCGCaCGGCG-GUuug -5'
24658 3' -61.2 NC_005264.1 + 2897 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 121923 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 37798 0.67 0.643388
Target:  5'- gCGGCGGaGaagaGGCGC--GCCGCCGAc- -3'
miRNA:   3'- gGCUGCC-Cg---CCGCGcaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 52206 0.67 0.643388
Target:  5'- gCCGugGGGCgcgguGGCGCGaGCugguaCGCCuugaAAGCg -3'
miRNA:   3'- -GGCugCCCG-----CCGCGCaCG-----GCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 45783 0.67 0.643388
Target:  5'- gCGcCGGaGCGGCuauuGCGgucuggGCCGCCGcGCu -3'
miRNA:   3'- gGCuGCC-CGCCG----CGCa-----CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 35499 0.67 0.642412
Target:  5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3'
miRNA:   3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.