miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 35499 0.67 0.642412
Target:  5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3'
miRNA:   3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5'
24658 3' -61.2 NC_005264.1 + 36751 0.66 0.711067
Target:  5'- gCGACGGcGCcggccGGCGcCGUcGCCGCUu-GCg -3'
miRNA:   3'- gGCUGCC-CG-----CCGC-GCA-CGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 37675 0.67 0.633629
Target:  5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3'
miRNA:   3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5'
24658 3' -61.2 NC_005264.1 + 37798 0.67 0.643388
Target:  5'- gCGGCGGaGaagaGGCGC--GCCGCCGAc- -3'
miRNA:   3'- gGCUGCC-Cg---CCGCGcaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 37985 0.67 0.672589
Target:  5'- gCCaGGCGaguGGCGGCcaccGCCGCCGGACu -3'
miRNA:   3'- -GG-CUGC---CCGCCGcgcaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 39091 0.66 0.739312
Target:  5'- cUCGGCGGGCaGCgGCGUcuggaccagcuGCUGUCGugGACg -3'
miRNA:   3'- -GGCUGCCCGcCG-CGCA-----------CGGCGGU--UUG- -5'
24658 3' -61.2 NC_005264.1 + 39813 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 40972 0.69 0.54652
Target:  5'- gCGACGGcGCGaGCGCGaccgGCCcuccGCCAAc- -3'
miRNA:   3'- gGCUGCC-CGC-CGCGCa---CGG----CGGUUug -5'
24658 3' -61.2 NC_005264.1 + 41733 0.66 0.711067
Target:  5'- gCCaGGCGGcaGCGGCGUauGUGCUGCgAuuCa -3'
miRNA:   3'- -GG-CUGCC--CGCCGCG--CACGGCGgUuuG- -5'
24658 3' -61.2 NC_005264.1 + 42256 0.69 0.564689
Target:  5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3'
miRNA:   3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43207 0.68 0.601451
Target:  5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3'
miRNA:   3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43234 0.71 0.420408
Target:  5'- --uGCaGGCGGCaCGUGCCGCCuGGACu -3'
miRNA:   3'- ggcUGcCCGCCGcGCACGGCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 43641 0.69 0.569497
Target:  5'- gCCGGCGaGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGC-CCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 43789 0.66 0.738382
Target:  5'- gCCGugGGuGCGGgGCGcaguuucUGUCGCgAuauAGCg -3'
miRNA:   3'- -GGCugCC-CGCCgCGC-------ACGGCGgU---UUG- -5'
24658 3' -61.2 NC_005264.1 + 45403 0.71 0.428846
Target:  5'- aCGAUggaGGGCGGCGCccUGCgCGCCGcGACa -3'
miRNA:   3'- gGCUG---CCCGCCGCGc-ACG-GCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 45650 0.72 0.403836
Target:  5'- aCGACGcGGCGGCuaG-G-CGCCAAGCg -3'
miRNA:   3'- gGCUGC-CCGCCGcgCaCgGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 45783 0.67 0.643388
Target:  5'- gCGcCGGaGCGGCuauuGCGgucuggGCCGCCGcGCu -3'
miRNA:   3'- gGCuGCC-CGCCG----CGCa-----CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 48937 0.72 0.395707
Target:  5'- cCCGAUGGGCacuuGUGCGgGCCGCUgcGCu -3'
miRNA:   3'- -GGCUGCCCGc---CGCGCaCGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 49489 0.68 0.591734
Target:  5'- uUCGACGGGCagcaGGUGCGcgucuucacgugccUGCUGCagaGGGCg -3'
miRNA:   3'- -GGCUGCCCG----CCGCGC--------------ACGGCGg--UUUG- -5'
24658 3' -61.2 NC_005264.1 + 51339 0.68 0.594647
Target:  5'- aUGA-GGGCGG-GUGUcGCCGCCGAc- -3'
miRNA:   3'- gGCUgCCCGCCgCGCA-CGGCGGUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.