miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 52206 0.67 0.643388
Target:  5'- gCCGugGGGCgcgguGGCGCGaGCugguaCGCCuugaAAGCg -3'
miRNA:   3'- -GGCugCCCG-----CCGCGCaCG-----GCGG----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 52554 0.69 0.556061
Target:  5'- aUCGAuggaaUGGGCGGUGCGgauggcacgGCUGCCuacGCg -3'
miRNA:   3'- -GGCU-----GCCCGCCGCGCa--------CGGCGGuu-UG- -5'
24658 3' -61.2 NC_005264.1 + 52970 0.72 0.401387
Target:  5'- gCGGCGgugcugcgaacucaGGCGGUGCGcgaGCaCGCCAAACu -3'
miRNA:   3'- gGCUGC--------------CCGCCGCGCa--CG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 54227 0.7 0.490546
Target:  5'- aCGGCGGcCGGUGCGUuCaCGCUAGGCu -3'
miRNA:   3'- gGCUGCCcGCCGCGCAcG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 54913 0.66 0.739312
Target:  5'- gCGAaGGucGCGGCGC-UGCUGgCGAACg -3'
miRNA:   3'- gGCUgCC--CGCCGCGcACGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 55618 0.66 0.700562
Target:  5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3'
miRNA:   3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 55829 0.66 0.748568
Target:  5'- gCCGgu-GGCGGCGCG-GCUGaCUggGCc -3'
miRNA:   3'- -GGCugcCCGCCGCGCaCGGC-GGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 56826 0.7 0.508931
Target:  5'- gCGGCGGcccuagcuaGCGGCuCGUgGCUGCCAGAUu -3'
miRNA:   3'- gGCUGCC---------CGCCGcGCA-CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 58016 0.66 0.739312
Target:  5'- cCCGGCGGacaggccgucguGCGGCGCccGCuCGUCucGCg -3'
miRNA:   3'- -GGCUGCC------------CGCCGCGcaCG-GCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 58365 0.7 0.463566
Target:  5'- uCUGGCGGGgcCGGCGCGauaUGC-GCCGGAUu -3'
miRNA:   3'- -GGCUGCCC--GCCGCGC---ACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 60847 0.69 0.54652
Target:  5'- gCGuCGGcGuCGGCGCGUGCgCGgCAAAg -3'
miRNA:   3'- gGCuGCC-C-GCCGCGCACG-GCgGUUUg -5'
24658 3' -61.2 NC_005264.1 + 62923 0.7 0.499701
Target:  5'- gCCGcGCGGGCuuGCGCG-GCCG-CAAGCc -3'
miRNA:   3'- -GGC-UGCCCGc-CGCGCaCGGCgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 64688 0.76 0.208115
Target:  5'- gCCGGCGGGCaGGC-CGUGCuCGCCcGAAUc -3'
miRNA:   3'- -GGCUGCCCG-CCGcGCACG-GCGG-UUUG- -5'
24658 3' -61.2 NC_005264.1 + 66198 0.78 0.167873
Target:  5'- aUCGGCGGGCGGUGCGccuccGCgGCCAGc- -3'
miRNA:   3'- -GGCUGCCCGCCGCGCa----CGgCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 66495 0.72 0.395707
Target:  5'- uUGGCGGGCuGCGCG-GCgCGCUcGACg -3'
miRNA:   3'- gGCUGCCCGcCGCGCaCG-GCGGuUUG- -5'
24658 3' -61.2 NC_005264.1 + 66695 0.74 0.293483
Target:  5'- gCCgGGCGGGgGGCGUacuacGUGUCGCCGGGg -3'
miRNA:   3'- -GG-CUGCCCgCCGCG-----CACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 68259 0.72 0.379769
Target:  5'- gCCG-CGGGCGGCcugcuGC-UGCCGCCucuuuGCg -3'
miRNA:   3'- -GGCuGCCCGCCG-----CGcACGGCGGuu---UG- -5'
24658 3' -61.2 NC_005264.1 + 69035 0.66 0.711067
Target:  5'- aCGGCGaGUcgaucucuuuGGcCGCG-GCCGCCGGGCa -3'
miRNA:   3'- gGCUGCcCG----------CC-GCGCaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 69398 0.77 0.184821
Target:  5'- aCGAUGGGCggguaGGCGCGccUGCCGCCGu-- -3'
miRNA:   3'- gGCUGCCCG-----CCGCGC--ACGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 70661 0.7 0.508931
Target:  5'- aCCGugGccGCGGCGCc-GCCGgCAGGCa -3'
miRNA:   3'- -GGCugCc-CGCCGCGcaCGGCgGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.