miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 70722 0.66 0.691919
Target:  5'- gCCGaACGcuGCGcUGUGUGCCGCCGcAGCg -3'
miRNA:   3'- -GGC-UGCc-CGCcGCGCACGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 72251 0.7 0.463566
Target:  5'- aCCG-CGGGCaaGGCGCGaccUGCCGCg---- -3'
miRNA:   3'- -GGCuGCCCG--CCGCGC---ACGGCGguuug -5'
24658 3' -61.2 NC_005264.1 + 72495 0.66 0.745801
Target:  5'- gUCGGCGGGuugaagaucugcgcCgagaGGCGCGUGgCGCUuuGCa -3'
miRNA:   3'- -GGCUGCCC--------------G----CCGCGCACgGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 72904 0.76 0.223277
Target:  5'- gCCGAUGGGCGGaaugaGCGacacguugcUGCCGUUGAGCa -3'
miRNA:   3'- -GGCUGCCCGCCg----CGC---------ACGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 73369 0.66 0.748568
Target:  5'- aCGcGCGGuGCuuuuGGCGCGgcuCUGCCAAGCc -3'
miRNA:   3'- gGC-UGCC-CG----CCGCGCac-GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 75320 0.66 0.70152
Target:  5'- gCCG-CGGGCGGCucaucgaucGCGgaGCCGC--AACg -3'
miRNA:   3'- -GGCuGCCCGCCG---------CGCa-CGGCGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 81901 0.7 0.499701
Target:  5'- gCGAUGGGCGG-GCGaGCCaGCaGAACg -3'
miRNA:   3'- gGCUGCCCGCCgCGCaCGG-CGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 82262 0.66 0.739312
Target:  5'- gCGACaGGCGGCaccggagcGCGaaggGuCCGCCGAGa -3'
miRNA:   3'- gGCUGcCCGCCG--------CGCa---C-GGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 83117 0.72 0.385298
Target:  5'- gCCGACGGGCgccaaggccgcggaGGCGCGU-CUGCCc--- -3'
miRNA:   3'- -GGCUGCCCG--------------CCGCGCAcGGCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 84765 0.68 0.623868
Target:  5'- aCGACGGGCaGCGCGgaGCUauaGauaCAGACg -3'
miRNA:   3'- gGCUGCCCGcCGCGCa-CGG---Cg--GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 84952 0.66 0.748568
Target:  5'- gCGcCGGGUGcuCGCuUGCgGCCAGGCu -3'
miRNA:   3'- gGCuGCCCGCc-GCGcACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 86972 0.66 0.727154
Target:  5'- -aGACGGGgGGCGUaagcgcgccuucaaGggGCCaGUCAAGCa -3'
miRNA:   3'- ggCUGCCCgCCGCG--------------Ca-CGG-CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 87595 0.68 0.584948
Target:  5'- aCGGCGcGUGGuCGCGUuauacaagacgGCCGCCGcGCa -3'
miRNA:   3'- gGCUGCcCGCC-GCGCA-----------CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 90385 0.72 0.379769
Target:  5'- uCCGACcGGCGGCGC---CCGCCGAuACa -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGCGGUU-UG- -5'
24658 3' -61.2 NC_005264.1 + 90456 0.83 0.075607
Target:  5'- -aGGUGGGCGGCGCG-GCCGUCAAACa -3'
miRNA:   3'- ggCUGCCCGCCGCGCaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 90719 0.66 0.691919
Target:  5'- uCCGGCaGGCGGCGCu--CCcUCAAACg -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 90965 0.73 0.327461
Target:  5'- gCGuCGGGCGccCGCGUGCCGUCGcggAACa -3'
miRNA:   3'- gGCuGCCCGCc-GCGCACGGCGGU---UUG- -5'
24658 3' -61.2 NC_005264.1 + 91027 0.73 0.341845
Target:  5'- cCCG-CGGGCGGCuuCG-GCCGCUAuGCg -3'
miRNA:   3'- -GGCuGCCCGCCGc-GCaCGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 91562 0.69 0.54652
Target:  5'- gCGGCGGGgGGCacgagGCuUGUCGCgGAGCu -3'
miRNA:   3'- gGCUGCCCgCCG-----CGcACGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 91909 0.68 0.614113
Target:  5'- gCGAUGGGCgGGCGCG-G-CGaCCAuACa -3'
miRNA:   3'- gGCUGCCCG-CCGCGCaCgGC-GGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.