miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 126890 0.66 0.691919
Target:  5'- uUGugGgGGCGGCGuCGgcGCC-CCAGAUg -3'
miRNA:   3'- gGCugC-CCGCCGC-GCa-CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 126109 0.66 0.711067
Target:  5'- -aGGCGGGCaaggaauGCGCG-GCgGCUGAGCc -3'
miRNA:   3'- ggCUGCCCGc------CGCGCaCGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 125894 0.68 0.594647
Target:  5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3'
miRNA:   3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5'
24658 3' -61.2 NC_005264.1 + 125281 0.7 0.499701
Target:  5'- cCCucCGcGGCGGCGCGcUGUCGCUucGCc -3'
miRNA:   3'- -GGcuGC-CCGCCGCGC-ACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 125038 0.66 0.711067
Target:  5'- cCCGACGGGCGGgGag-GCU-CCGGGg -3'
miRNA:   3'- -GGCUGCCCGCCgCgcaCGGcGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 124835 0.69 0.54652
Target:  5'- aCGGCGuucaauaguccGGCGGCG-GUgGCCGCCAcuCg -3'
miRNA:   3'- gGCUGC-----------CCGCCGCgCA-CGGCGGUuuG- -5'
24658 3' -61.2 NC_005264.1 + 124287 0.66 0.729972
Target:  5'- gCGcCGGGaGGCGaGUcGCgGCCGGACg -3'
miRNA:   3'- gGCuGCCCgCCGCgCA-CGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 124170 0.67 0.6307
Target:  5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3'
miRNA:   3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 122765 0.67 0.662876
Target:  5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3'
miRNA:   3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 122697 0.72 0.387684
Target:  5'- aCGAUGGGCGGC-CGUcucgGCgGCgAGACg -3'
miRNA:   3'- gGCUGCCCGCCGcGCA----CGgCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 122656 0.66 0.691919
Target:  5'- -gGGCGGGCGcGCugacauucgucGCGaugGCCGCCGu-- -3'
miRNA:   3'- ggCUGCCCGC-CG-----------CGCa--CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 122568 0.66 0.691919
Target:  5'- gCGACGcGGCGGCGUccagcaucucucGUGCCacuuccuccGCguAACg -3'
miRNA:   3'- gGCUGC-CCGCCGCG------------CACGG---------CGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 121923 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 120789 0.66 0.717715
Target:  5'- gCCG-CGGGCaacgcgauuggauaGGcCGCGUGCgCGUCGAc- -3'
miRNA:   3'- -GGCuGCCCG--------------CC-GCGCACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 119593 0.72 0.379769
Target:  5'- aCGAUGaaccucaguccaGGCGGCaCGUGCCGCCu-GCa -3'
miRNA:   3'- gGCUGC------------CCGCCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 119433 0.66 0.720554
Target:  5'- gCUGGCGGGCGaucuCGCugcccagGCCGCCcacAGACu -3'
miRNA:   3'- -GGCUGCCCGCc---GCGca-----CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 119162 0.66 0.70152
Target:  5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3'
miRNA:   3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 116665 0.69 0.556061
Target:  5'- -aGAU-GGCGGgGCG-GCCGCCGAu- -3'
miRNA:   3'- ggCUGcCCGCCgCGCaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 114474 0.67 0.682273
Target:  5'- cUCGACGcGGCacuGCGCaacgagGCCGCCAuGGCg -3'
miRNA:   3'- -GGCUGC-CCGc--CGCGca----CGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 110147 0.7 0.490546
Target:  5'- -gGGCGGGCGGCGaaacCCGCCGcGGCu -3'
miRNA:   3'- ggCUGCCCGCCGCgcacGGCGGU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.