miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 108597 0.66 0.711067
Target:  5'- cUCGACacguuGGC-GCGCGggGCCGCCucGACa -3'
miRNA:   3'- -GGCUGc----CCGcCGCGCa-CGGCGGu-UUG- -5'
24658 3' -61.2 NC_005264.1 + 106525 0.7 0.508931
Target:  5'- gCGAC-GGCGGCaGCGcgGCCGCgGAGu -3'
miRNA:   3'- gGCUGcCCGCCG-CGCa-CGGCGgUUUg -5'
24658 3' -61.2 NC_005264.1 + 106244 0.69 0.518233
Target:  5'- cCCaGAUGGGCcGCGCGUagCGCCAGAa -3'
miRNA:   3'- -GG-CUGCCCGcCGCGCAcgGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 105654 0.69 0.556061
Target:  5'- --cACGGGCGGCGCuuUGCCGgcggCAGACc -3'
miRNA:   3'- ggcUGCCCGCCGCGc-ACGGCg---GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 104922 0.66 0.739312
Target:  5'- -aGACaaGGCGGCGgaacccccagcCGUGCCaagcGCCGAGCc -3'
miRNA:   3'- ggCUGc-CCGCCGC-----------GCACGG----CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 103720 0.76 0.233359
Target:  5'- gCGGCGGcGCGGCaucagcgGCGgcgGCCGCCAuGCu -3'
miRNA:   3'- gGCUGCC-CGCCG-------CGCa--CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 103137 0.71 0.454746
Target:  5'- gCCGcCGGcGCGGCGCGcGgCGCaAAGCg -3'
miRNA:   3'- -GGCuGCC-CGCCGCGCaCgGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 102879 0.67 0.657036
Target:  5'- gCGugGcugaGCGGCGCGgacaccaugauaaCCGCCGAGCu -3'
miRNA:   3'- gGCugCc---CGCCGCGCac-----------GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 99897 0.7 0.508931
Target:  5'- cCCGAacaaaaGGcGCGGCuuGCG-GCCGCgCAAGCc -3'
miRNA:   3'- -GGCUg-----CC-CGCCG--CGCaCGGCG-GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 99393 0.69 0.56565
Target:  5'- aCGGCGGaGCGGgGUaUGCCaGgCAAGCg -3'
miRNA:   3'- gGCUGCC-CGCCgCGcACGG-CgGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 98515 0.66 0.70439
Target:  5'- gCCGACGGGgGGCcucagucuuggcaGCGgcaacgcgcuguggGCCGCgAuACu -3'
miRNA:   3'- -GGCUGCCCgCCG-------------CGCa-------------CGGCGgUuUG- -5'
24658 3' -61.2 NC_005264.1 + 97786 0.82 0.084993
Target:  5'- -gGAUGGGCGGCGCGgcguaaugaguagGCUGCCGAACc -3'
miRNA:   3'- ggCUGCCCGCCGCGCa------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 97526 0.66 0.70152
Target:  5'- gCCG-CGGcuGUGGCGUGgcagcggGCaagaGCCAGACa -3'
miRNA:   3'- -GGCuGCC--CGCCGCGCa------CGg---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 95634 0.66 0.747647
Target:  5'- cCCGACGGuucccacuauagGCGcCGCGUcauagcgcugcagGCCGCCAu-- -3'
miRNA:   3'- -GGCUGCC------------CGCcGCGCA-------------CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 95465 0.69 0.527601
Target:  5'- gCCGGCGGGCGcagcgaGCGCG-GgCGCUAc-- -3'
miRNA:   3'- -GGCUGCCCGC------CGCGCaCgGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 95358 1.1 0.001013
Target:  5'- gCCGACGGGCGGCGCGUGCCGCCAAACu -3'
miRNA:   3'- -GGCUGCCCGCCGCGCACGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 93864 0.66 0.739312
Target:  5'- gCGGCGGGUaGU-CGUGCCGUggCAGGCc -3'
miRNA:   3'- gGCUGCCCGcCGcGCACGGCG--GUUUG- -5'
24658 3' -61.2 NC_005264.1 + 91909 0.68 0.614113
Target:  5'- gCGAUGGGCgGGCGCG-G-CGaCCAuACa -3'
miRNA:   3'- gGCUGCCCG-CCGCGCaCgGC-GGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 91562 0.69 0.54652
Target:  5'- gCGGCGGGgGGCacgagGCuUGUCGCgGAGCu -3'
miRNA:   3'- gGCUGCCCgCCG-----CGcACGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 91027 0.73 0.341845
Target:  5'- cCCG-CGGGCGGCuuCG-GCCGCUAuGCg -3'
miRNA:   3'- -GGCuGCCCGCCGc-GCaCGGCGGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.