miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 162668 0.75 0.26471
Target:  5'- gCCGGCGGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGCCCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 14043 0.73 0.327461
Target:  5'- uCCgGACGuGGCGGgGCcgggugggaacGUGCaCGCCAGACu -3'
miRNA:   3'- -GG-CUGC-CCGCCgCG-----------CACG-GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 122697 0.72 0.387684
Target:  5'- aCGAUGGGCGGC-CGUcucgGCgGCgAGACg -3'
miRNA:   3'- gGCUGCCCGCCGcGCA----CGgCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 58365 0.7 0.463566
Target:  5'- uCUGGCGGGgcCGGCGCGauaUGC-GCCGGAUu -3'
miRNA:   3'- -GGCUGCCC--GCCGCGC---ACGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 25538 0.7 0.508931
Target:  5'- gCGAUGGGUGccguacgccCGCGUcGCCGCCAAc- -3'
miRNA:   3'- gGCUGCCCGCc--------GCGCA-CGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 159999 0.69 0.54652
Target:  5'- gCGACGGcGCGaGCGCGaccgGCCcuccGCCAAc- -3'
miRNA:   3'- gGCUGCC-CGC-CGCGCa---CGG----CGGUUug -5'
24658 3' -61.2 NC_005264.1 + 161283 0.69 0.564689
Target:  5'- uCCGGcCGGGgcccgccuauugcCGGCGCGgucaacGCCGCgGGGCc -3'
miRNA:   3'- -GGCU-GCCC-------------GCCGCGCa-----CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 9741 0.66 0.739312
Target:  5'- uCUGACucGGCGGCagGCaaGCCGCCGuGCu -3'
miRNA:   3'- -GGCUGc-CCGCCG--CGcaCGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 131565 0.66 0.720554
Target:  5'- gCCGguaggaGCGGGgGGCGUucGCCGCgAAGa -3'
miRNA:   3'- -GGC------UGCCCgCCGCGcaCGGCGgUUUg -5'
24658 3' -61.2 NC_005264.1 + 108597 0.66 0.711067
Target:  5'- cUCGACacguuGGC-GCGCGggGCCGCCucGACa -3'
miRNA:   3'- -GGCUGc----CCGcCGCGCa-CGGCGGu-UUG- -5'
24658 3' -61.2 NC_005264.1 + 121923 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 131040 0.67 0.662876
Target:  5'- aCGACcugcGGCGGCGaccGCCGCCcuuAGGCg -3'
miRNA:   3'- gGCUGc---CCGCCGCgcaCGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 90719 0.66 0.691919
Target:  5'- uCCGGCaGGCGGCGCu--CCcUCAAACg -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 75320 0.66 0.70152
Target:  5'- gCCG-CGGGCGGCucaucgaucGCGgaGCCGC--AACg -3'
miRNA:   3'- -GGCuGCCCGCCG---------CGCa-CGGCGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 26368 0.66 0.691919
Target:  5'- gCGGCaGGCuGCGCGgcGCCGUCucuGAGCg -3'
miRNA:   3'- gGCUGcCCGcCGCGCa-CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 157942 0.68 0.572387
Target:  5'- aCGGCGGccaGCGuggccucgaacuccGCGUGUcgcuuGCCGCCAAGCu -3'
miRNA:   3'- gGCUGCC---CGC--------------CGCGCA-----CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43641 0.69 0.569497
Target:  5'- gCCGGCGaGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGC-CCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 87595 0.68 0.584948
Target:  5'- aCGGCGcGUGGuCGCGUuauacaagacgGCCGCCGcGCa -3'
miRNA:   3'- gGCUGCcCGCC-GCGCA-----------CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 86972 0.66 0.727154
Target:  5'- -aGACGGGgGGCGUaagcgcgccuucaaGggGCCaGUCAAGCa -3'
miRNA:   3'- ggCUGCCCgCCGCG--------------Ca-CGG-CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 55618 0.66 0.700562
Target:  5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3'
miRNA:   3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.