Results 81 - 100 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 55618 | 0.66 | 0.700562 |
Target: 5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3' miRNA: 3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 97526 | 0.66 | 0.70152 |
Target: 5'- gCCG-CGGcuGUGGCGUGgcagcggGCaagaGCCAGACa -3' miRNA: 3'- -GGCuGCC--CGCCGCGCa------CGg---CGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 135 | 0.66 | 0.70152 |
Target: 5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3' miRNA: 3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 21904 | 0.66 | 0.70152 |
Target: 5'- -----cGGCGGCGCGUGCgGUCGuaguGCu -3' miRNA: 3'- ggcugcCCGCCGCGCACGgCGGUu---UG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 98515 | 0.66 | 0.70439 |
Target: 5'- gCCGACGGGgGGCcucagucuuggcaGCGgcaacgcgcuguggGCCGCgAuACu -3' miRNA: 3'- -GGCUGCCCgCCG-------------CGCa-------------CGGCGgUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 19039 | 0.66 | 0.708209 |
Target: 5'- aCGGCaGGCGGgaaaGCGUucgugacuaagcccGCCGCgGGGCa -3' miRNA: 3'- gGCUGcCCGCCg---CGCA--------------CGGCGgUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 86972 | 0.66 | 0.727154 |
Target: 5'- -aGACGGGgGGCGUaagcgcgccuucaaGggGCCaGUCAAGCa -3' miRNA: 3'- ggCUGCCCgCCGCG--------------Ca-CGG-CGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 151301 | 0.66 | 0.729033 |
Target: 5'- cCCGGgGGGCaGCGUacGUGUuauccugCGCCAAAa -3' miRNA: 3'- -GGCUgCCCGcCGCG--CACG-------GCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 5143 | 0.67 | 0.6307 |
Target: 5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3' miRNA: 3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 20133 | 0.68 | 0.614113 |
Target: 5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3' miRNA: 3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 157942 | 0.68 | 0.572387 |
Target: 5'- aCGGCGGccaGCGuggccucgaacuccGCGUGUcgcuuGCCGCCAAGCu -3' miRNA: 3'- gGCUGCC---CGC--------------CGCGCA-----CGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 32386 | 0.68 | 0.584948 |
Target: 5'- gCCGGCGGcCGGCGUccGCCGC--GACu -3' miRNA: 3'- -GGCUGCCcGCCGCGcaCGGCGguUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 87595 | 0.68 | 0.584948 |
Target: 5'- aCGGCGcGUGGuCGCGUuauacaagacgGCCGCCGcGCa -3' miRNA: 3'- gGCUGCcCGCC-GCGCA-----------CGGCGGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 31970 | 0.68 | 0.594647 |
Target: 5'- gCGACGGGCcGCGUGUccgauGCgCGCUAcAGCg -3' miRNA: 3'- gGCUGCCCGcCGCGCA-----CG-GCGGU-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 6868 | 0.68 | 0.594647 |
Target: 5'- gUCGuGCGGGCuuguuucucGGCGCGUGuuGCUg--- -3' miRNA: 3'- -GGC-UGCCCG---------CCGCGCACggCGGuuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 31793 | 0.68 | 0.594647 |
Target: 5'- gCCuaaGGGCGGCG-GUcGCCGCCGc-- -3' miRNA: 3'- -GGcugCCCGCCGCgCA-CGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 51339 | 0.68 | 0.594647 |
Target: 5'- aUGA-GGGCGG-GUGUcGCCGCCGAc- -3' miRNA: 3'- gGCUgCCCGCCgCGCA-CGGCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 134972 | 0.68 | 0.594647 |
Target: 5'- aCGACaaaaaGGCGGCgGCGcauugggcggaUGCCGCCGcGACa -3' miRNA: 3'- gGCUGc----CCGCCG-CGC-----------ACGGCGGU-UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 43207 | 0.68 | 0.601451 |
Target: 5'- gCCGGCGGGgggggggggggcuaCGGCGgG-GCUGgCGGGCg -3' miRNA: 3'- -GGCUGCCC--------------GCCGCgCaCGGCgGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 129605 | 0.68 | 0.604371 |
Target: 5'- gCGGCGcGGCGGCGaa-GCuucucgaguagaCGCCGAGCg -3' miRNA: 3'- gGCUGC-CCGCCGCgcaCG------------GCGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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