miRNA display CGI


Results 101 - 120 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 129605 0.68 0.604371
Target:  5'- gCGGCGcGGCGGCGaa-GCuucucgaguagaCGCCGAGCg -3'
miRNA:   3'- gGCUGC-CCGCCGCgcaCG------------GCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 20133 0.68 0.614113
Target:  5'- aCGauGCGGGCaGGCgaugGCGcGCCGCCGGc- -3'
miRNA:   3'- gGC--UGCCCG-CCG----CGCaCGGCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 5143 0.67 0.6307
Target:  5'- aCGACGGG-GGCGUcgccgucgucgucgGUGCCgGCCucgucGGACa -3'
miRNA:   3'- gGCUGCCCgCCGCG--------------CACGG-CGG-----UUUG- -5'
24658 3' -61.2 NC_005264.1 + 37675 0.67 0.633629
Target:  5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3'
miRNA:   3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5'
24658 3' -61.2 NC_005264.1 + 139744 0.67 0.636557
Target:  5'- -aGGCGGGCGGCagacaacGCGggacaUGCCGgcgucucccgguaccCCAAGCa -3'
miRNA:   3'- ggCUGCCCGCCG-------CGC-----ACGGC---------------GGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 35499 0.67 0.642412
Target:  5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3'
miRNA:   3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5'
24658 3' -61.2 NC_005264.1 + 157942 0.68 0.572387
Target:  5'- aCGGCGGccaGCGuggccucgaacuccGCGUGUcgcuuGCCGCCAAGCu -3'
miRNA:   3'- gGCUGCC---CGC--------------CGCGCA-----CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 43641 0.69 0.569497
Target:  5'- gCCGGCGaGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3'
miRNA:   3'- -GGCUGC-CCG---------------CCGCGC-ACG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 31605 0.73 0.349207
Target:  5'- uCUGGCGaGGCGGCGCGcaUCGCCcuGCg -3'
miRNA:   3'- -GGCUGC-CCGCCGCGCacGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 126109 0.66 0.711067
Target:  5'- -aGGCGGGCaaggaauGCGCG-GCgGCUGAGCc -3'
miRNA:   3'- ggCUGCCCGc------CGCGCaCGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 18009 0.66 0.711067
Target:  5'- uCUGAC-GGCGGCGgGUcgGCCGCgGu-- -3'
miRNA:   3'- -GGCUGcCCGCCGCgCA--CGGCGgUuug -5'
24658 3' -61.2 NC_005264.1 + 19039 0.66 0.708209
Target:  5'- aCGGCaGGCGGgaaaGCGUucgugacuaagcccGCCGCgGGGCa -3'
miRNA:   3'- gGCUGcCCGCCg---CGCA--------------CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 98515 0.66 0.70439
Target:  5'- gCCGACGGGgGGCcucagucuuggcaGCGgcaacgcgcuguggGCCGCgAuACu -3'
miRNA:   3'- -GGCUGCCCgCCG-------------CGCa-------------CGGCGgUuUG- -5'
24658 3' -61.2 NC_005264.1 + 21904 0.66 0.70152
Target:  5'- -----cGGCGGCGCGUGCgGUCGuaguGCu -3'
miRNA:   3'- ggcugcCCGCCGCGCACGgCGGUu---UG- -5'
24658 3' -61.2 NC_005264.1 + 135 0.66 0.70152
Target:  5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3'
miRNA:   3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 97526 0.66 0.70152
Target:  5'- gCCG-CGGcuGUGGCGUGgcagcggGCaagaGCCAGACa -3'
miRNA:   3'- -GGCuGCC--CGCCGCGCa------CGg---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 55618 0.66 0.700562
Target:  5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3'
miRNA:   3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 26368 0.66 0.691919
Target:  5'- gCGGCaGGCuGCGCGgcGCCGUCucuGAGCg -3'
miRNA:   3'- gGCUGcCCGcCGCGCa-CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 2897 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 134972 0.68 0.594647
Target:  5'- aCGACaaaaaGGCGGCgGCGcauugggcggaUGCCGCCGcGACa -3'
miRNA:   3'- gGCUGc----CCGCCG-CGC-----------ACGGCGGU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.