miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 69035 0.66 0.711067
Target:  5'- aCGGCGaGUcgaucucuuuGGcCGCG-GCCGCCGGGCa -3'
miRNA:   3'- gGCUGCcCG----------CC-GCGCaCGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 36751 0.66 0.711067
Target:  5'- gCGACGGcGCcggccGGCGcCGUcGCCGCUu-GCg -3'
miRNA:   3'- gGCUGCC-CG-----CCGC-GCA-CGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 7864 0.66 0.691919
Target:  5'- uUGugGgGGCGGCGuCGgcGCC-CCAGAUg -3'
miRNA:   3'- gGCugC-CCGCCGC-GCa-CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 3629 0.66 0.691919
Target:  5'- -gGGCGGGCGcGCugacauucgucGCGaugGCCGCCGu-- -3'
miRNA:   3'- ggCUGCCCGC-CG-----------CGCa--CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 70722 0.66 0.691919
Target:  5'- gCCGaACGcuGCGcUGUGUGCCGCCGcAGCg -3'
miRNA:   3'- -GGC-UGCc-CGCcGCGCACGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 3541 0.66 0.691919
Target:  5'- gCGACGcGGCGGCGUccagcaucucucGUGCCacuuccuccGCguAACg -3'
miRNA:   3'- gGCUGC-CCGCCGCG------------CACGG---------CGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 140781 0.67 0.682273
Target:  5'- uCCGGC-GGCGGCGCua-CCGuCCAAGg -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGC-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 114474 0.67 0.682273
Target:  5'- cUCGACGcGGCacuGCGCaacgagGCCGCCAuGGCg -3'
miRNA:   3'- -GGCUGC-CCGc--CGCGca----CGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 31199 0.67 0.682273
Target:  5'- -gGACGGGgGGCuGCG-GCCcuCCAGAg -3'
miRNA:   3'- ggCUGCCCgCCG-CGCaCGGc-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 39813 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 26368 0.66 0.691919
Target:  5'- gCGGCaGGCuGCGCGgcGCCGUCucuGAGCg -3'
miRNA:   3'- gGCUGcCCGcCGCGCa-CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 55618 0.66 0.700562
Target:  5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3'
miRNA:   3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 6011 0.66 0.711067
Target:  5'- cCCGACGGGCGGgGag-GCU-CCGGGg -3'
miRNA:   3'- -GGCUGCCCGCCgCgcaCGGcGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 126109 0.66 0.711067
Target:  5'- -aGGCGGGCaaggaauGCGCG-GCgGCUGAGCc -3'
miRNA:   3'- ggCUGCCCGc------CGCGCaCGgCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 18009 0.66 0.711067
Target:  5'- uCUGAC-GGCGGCGgGUcgGCCGCgGu-- -3'
miRNA:   3'- -GGCUGcCCGCCGCgCA--CGGCGgUuug -5'
24658 3' -61.2 NC_005264.1 + 19039 0.66 0.708209
Target:  5'- aCGGCaGGCGGgaaaGCGUucgugacuaagcccGCCGCgGGGCa -3'
miRNA:   3'- gGCUGcCCGCCg---CGCA--------------CGGCGgUUUG- -5'
24658 3' -61.2 NC_005264.1 + 98515 0.66 0.70439
Target:  5'- gCCGACGGGgGGCcucagucuuggcaGCGgcaacgcgcuguggGCCGCgAuACu -3'
miRNA:   3'- -GGCUGCCCgCCG-------------CGCa-------------CGGCGgUuUG- -5'
24658 3' -61.2 NC_005264.1 + 21904 0.66 0.70152
Target:  5'- -----cGGCGGCGCGUGCgGUCGuaguGCu -3'
miRNA:   3'- ggcugcCCGCCGCGCACGgCGGUu---UG- -5'
24658 3' -61.2 NC_005264.1 + 135 0.66 0.70152
Target:  5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3'
miRNA:   3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 97526 0.66 0.70152
Target:  5'- gCCG-CGGcuGUGGCGUGgcagcggGCaagaGCCAGACa -3'
miRNA:   3'- -GGCuGCC--CGCCGCGCa------CGg---CGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.