miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 3' -61.2 NC_005264.1 + 3739 0.67 0.662876
Target:  5'- aCGACgaGGaGCGGgGCcucuUGCCGCCGGGg -3'
miRNA:   3'- gGCUG--CC-CGCCgCGc---ACGGCGGUUUg -5'
24658 3' -61.2 NC_005264.1 + 102879 0.67 0.657036
Target:  5'- gCGugGcugaGCGGCGCGgacaccaugauaaCCGCCGAGCu -3'
miRNA:   3'- gGCugCc---CGCCGCGCac-----------GGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 157690 0.67 0.653139
Target:  5'- uCgGACGauGCGGCGCG-GCCGCgCAu-- -3'
miRNA:   3'- -GgCUGCc-CGCCGCGCaCGGCG-GUuug -5'
24658 3' -61.2 NC_005264.1 + 2897 0.67 0.64729
Target:  5'- gCGGCGGGgagGGCGaCGgcgagagcgacggaGUCGCCGAGCg -3'
miRNA:   3'- gGCUGCCCg--CCGC-GCa-------------CGGCGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 45783 0.67 0.643388
Target:  5'- gCGcCGGaGCGGCuauuGCGgucuggGCCGCCGcGCu -3'
miRNA:   3'- gGCuGCC-CGCCG----CGCa-----CGGCGGUuUG- -5'
24658 3' -61.2 NC_005264.1 + 35499 0.67 0.642412
Target:  5'- aCGACGGcgacgccGCGGCGCagGUGCCcCCGu-- -3'
miRNA:   3'- gGCUGCC-------CGCCGCG--CACGGcGGUuug -5'
24658 3' -61.2 NC_005264.1 + 139744 0.67 0.636557
Target:  5'- -aGGCGGGCGGCagacaacGCGggacaUGCCGgcgucucccgguaccCCAAGCa -3'
miRNA:   3'- ggCUGCCCGCCG-------CGC-----ACGGC---------------GGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 39813 0.67 0.672589
Target:  5'- cCUGGUGGGCgaggaGGCaUGUGCCGCCcuGCu -3'
miRNA:   3'- -GGCUGCCCG-----CCGcGCACGGCGGuuUG- -5'
24658 3' -61.2 NC_005264.1 + 31199 0.67 0.682273
Target:  5'- -gGACGGGgGGCuGCG-GCCcuCCAGAg -3'
miRNA:   3'- ggCUGCCCgCCG-CGCaCGGc-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 114474 0.67 0.682273
Target:  5'- cUCGACGcGGCacuGCGCaacgagGCCGCCAuGGCg -3'
miRNA:   3'- -GGCUGC-CCGc--CGCGca----CGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 135 0.66 0.70152
Target:  5'- cCCGGCGGccgccuuaacGcCGGCGCGcaGCgCGCCGAc- -3'
miRNA:   3'- -GGCUGCC----------C-GCCGCGCa-CG-GCGGUUug -5'
24658 3' -61.2 NC_005264.1 + 97526 0.66 0.70152
Target:  5'- gCCG-CGGcuGUGGCGUGgcagcggGCaagaGCCAGACa -3'
miRNA:   3'- -GGCuGCC--CGCCGCGCa------CGg---CGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 55618 0.66 0.700562
Target:  5'- gCGGCuGGCGccgaaugccaaccGCGCGcGCCGCCGc-- -3'
miRNA:   3'- gGCUGcCCGC-------------CGCGCaCGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 26368 0.66 0.691919
Target:  5'- gCGGCaGGCuGCGCGgcGCCGUCucuGAGCg -3'
miRNA:   3'- gGCUGcCCGcCGCGCa-CGGCGG---UUUG- -5'
24658 3' -61.2 NC_005264.1 + 7864 0.66 0.691919
Target:  5'- uUGugGgGGCGGCGuCGgcGCC-CCAGAUg -3'
miRNA:   3'- gGCugC-CCGCCGC-GCa-CGGcGGUUUG- -5'
24658 3' -61.2 NC_005264.1 + 3629 0.66 0.691919
Target:  5'- -gGGCGGGCGcGCugacauucgucGCGaugGCCGCCGu-- -3'
miRNA:   3'- ggCUGCCCGC-CG-----------CGCa--CGGCGGUuug -5'
24658 3' -61.2 NC_005264.1 + 70722 0.66 0.691919
Target:  5'- gCCGaACGcuGCGcUGUGUGCCGCCGcAGCg -3'
miRNA:   3'- -GGC-UGCc-CGCcGCGCACGGCGGU-UUG- -5'
24658 3' -61.2 NC_005264.1 + 3541 0.66 0.691919
Target:  5'- gCGACGcGGCGGCGUccagcaucucucGUGCCacuuccuccGCguAACg -3'
miRNA:   3'- gGCUGC-CCGCCGCG------------CACGG---------CGguUUG- -5'
24658 3' -61.2 NC_005264.1 + 140781 0.67 0.682273
Target:  5'- uCCGGC-GGCGGCGCua-CCGuCCAAGg -3'
miRNA:   3'- -GGCUGcCCGCCGCGcacGGC-GGUUUg -5'
24658 3' -61.2 NC_005264.1 + 37675 0.67 0.633629
Target:  5'- gCGACGGGC-GCGCG-GCCcucGCCc--- -3'
miRNA:   3'- gGCUGCCCGcCGCGCaCGG---CGGuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.