Results 21 - 40 of 177 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 155895 | 0.66 | 0.729972 |
Target: 5'- gUGACGGuGCGGCGCGacGUauuaGCUcaAGACa -3' miRNA: 3'- gGCUGCC-CGCCGCGCa-CGg---CGG--UUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 5260 | 0.66 | 0.729972 |
Target: 5'- gCGcCGGGaGGCGaGUcGCgGCCGGACg -3' miRNA: 3'- gGCuGCCCgCCGCgCA-CGgCGGUUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 151301 | 0.66 | 0.729033 |
Target: 5'- cCCGGgGGGCaGCGUacGUGUuauccugCGCCAAAa -3' miRNA: 3'- -GGCUgCCCGcCGCG--CACG-------GCGGUUUg -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 86972 | 0.66 | 0.727154 |
Target: 5'- -aGACGGGgGGCGUaagcgcgccuucaaGggGCCaGUCAAGCa -3' miRNA: 3'- ggCUGCCCgCCGCG--------------Ca-CGG-CGGUUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 145952 | 0.66 | 0.720554 |
Target: 5'- aCCGACGacGGCGacauauCGUuUGCCGCCGccGACa -3' miRNA: 3'- -GGCUGC--CCGCc-----GCGcACGGCGGU--UUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 119433 | 0.66 | 0.720554 |
Target: 5'- gCUGGCGGGCGaucuCGCugcccagGCCGCCcacAGACu -3' miRNA: 3'- -GGCUGCCCGCc---GCGca-----CGGCGG---UUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 12538 | 0.66 | 0.720554 |
Target: 5'- gCCGguaggaGCGGGgGGCGUucGCCGCgAAGa -3' miRNA: 3'- -GGC------UGCCCgCCGCGcaCGGCGgUUUg -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 131565 | 0.66 | 0.720554 |
Target: 5'- gCCGguaggaGCGGGgGGCGUucGCCGCgAAGa -3' miRNA: 3'- -GGC------UGCCCgCCGCGcaCGGCGgUUUg -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 120789 | 0.66 | 0.717715 |
Target: 5'- gCCG-CGGGCaacgcgauuggauaGGcCGCGUGCgCGUCGAc- -3' miRNA: 3'- -GGCuGCCCG--------------CC-GCGCACG-GCGGUUug -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 150714 | 0.66 | 0.716767 |
Target: 5'- gCCGGCGGaggaaucGUcaguuuuucucgcgGGgGUGUGCaCGCCAGGCu -3' miRNA: 3'- -GGCUGCC-------CG--------------CCgCGCACG-GCGGUUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 155777 | 0.66 | 0.711067 |
Target: 5'- gCGACGGcGCcggccGGCGcCGUcGCCGCUu-GCg -3' miRNA: 3'- gGCUGCC-CG-----CCGC-GCA-CGGCGGuuUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 36751 | 0.66 | 0.711067 |
Target: 5'- gCGACGGcGCcggccGGCGcCGUcGCCGCUu-GCg -3' miRNA: 3'- gGCUGCC-CG-----CCGC-GCA-CGGCGGuuUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 41733 | 0.66 | 0.711067 |
Target: 5'- gCCaGGCGGcaGCGGCGUauGUGCUGCgAuuCa -3' miRNA: 3'- -GG-CUGCC--CGCCGCG--CACGGCGgUuuG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 108597 | 0.66 | 0.711067 |
Target: 5'- cUCGACacguuGGC-GCGCGggGCCGCCucGACa -3' miRNA: 3'- -GGCUGc----CCGcCGCGCa-CGGCGGu-UUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 125038 | 0.66 | 0.711067 |
Target: 5'- cCCGACGGGCGGgGag-GCU-CCGGGg -3' miRNA: 3'- -GGCUGCCCGCCgCgcaCGGcGGUUUg -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 69035 | 0.66 | 0.711067 |
Target: 5'- aCGGCGaGUcgaucucuuuGGcCGCG-GCCGCCGGGCa -3' miRNA: 3'- gGCUGCcCG----------CC-GCGCaCGGCGGUUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 6011 | 0.66 | 0.711067 |
Target: 5'- cCCGACGGGCGGgGag-GCU-CCGGGg -3' miRNA: 3'- -GGCUGCCCGCCgCgcaCGGcGGUUUg -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 126109 | 0.66 | 0.711067 |
Target: 5'- -aGGCGGGCaaggaauGCGCG-GCgGCUGAGCc -3' miRNA: 3'- ggCUGCCCGc------CGCGCaCGgCGGUUUG- -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 18009 | 0.66 | 0.711067 |
Target: 5'- uCUGAC-GGCGGCGgGUcgGCCGCgGu-- -3' miRNA: 3'- -GGCUGcCCGCCGCgCA--CGGCGgUuug -5' |
|||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 19039 | 0.66 | 0.708209 |
Target: 5'- aCGGCaGGCGGgaaaGCGUucgugacuaagcccGCCGCgGGGCa -3' miRNA: 3'- gGCUGcCCGCCg---CGCA--------------CGGCGgUUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home