miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24658 5' -43.7 NC_005264.1 + 121692 0.66 1
Target:  5'- aGGACUUGUacgCAGuucUUUACGCGGUa-- -3'
miRNA:   3'- -CCUGAACGa--GUUu--AAGUGCGUUAagc -5'
24658 5' -43.7 NC_005264.1 + 152130 0.66 1
Target:  5'- -uGCUUGCUCGcugaCGCGCAuacugUCGa -3'
miRNA:   3'- ccUGAACGAGUuuaaGUGCGUua---AGC- -5'
24658 5' -43.7 NC_005264.1 + 33103 0.66 1
Target:  5'- -uGCUUGCUCGcugaCGCGCAuacugUCGa -3'
miRNA:   3'- ccUGAACGAGUuuaaGUGCGUua---AGC- -5'
24658 5' -43.7 NC_005264.1 + 88999 0.67 0.999999
Target:  5'- uGGCUaUGCUgAGA-UCGCGCAGcUCGc -3'
miRNA:   3'- cCUGA-ACGAgUUUaAGUGCGUUaAGC- -5'
24658 5' -43.7 NC_005264.1 + 58676 0.67 0.999999
Target:  5'- -aACUUGCUgGAGgaggCACGCGuuuucuAUUCGg -3'
miRNA:   3'- ccUGAACGAgUUUaa--GUGCGU------UAAGC- -5'
24658 5' -43.7 NC_005264.1 + 62929 0.67 0.999999
Target:  5'- cGGGCUUGCgcggccgCAAGc-CGCGCcuuuuGUUCGg -3'
miRNA:   3'- -CCUGAACGa------GUUUaaGUGCGu----UAAGC- -5'
24658 5' -43.7 NC_005264.1 + 159452 0.68 0.999996
Target:  5'- -----cGCUCAAGUUUACGCGAg--- -3'
miRNA:   3'- ccugaaCGAGUUUAAGUGCGUUaagc -5'
24658 5' -43.7 NC_005264.1 + 115859 0.68 0.999996
Target:  5'- aGGACUcccUGCUUGGcc-CACGCGAUgagCGa -3'
miRNA:   3'- -CCUGA---ACGAGUUuaaGUGCGUUAa--GC- -5'
24658 5' -43.7 NC_005264.1 + 30518 0.68 0.999992
Target:  5'- gGGAagcgGCUC----UCGCGCAGUUUGg -3'
miRNA:   3'- -CCUgaa-CGAGuuuaAGUGCGUUAAGC- -5'
24658 5' -43.7 NC_005264.1 + 34202 0.69 0.999985
Target:  5'- uGGCcUGCUCA-----GCGCAGUUCGc -3'
miRNA:   3'- cCUGaACGAGUuuaagUGCGUUAAGC- -5'
24658 5' -43.7 NC_005264.1 + 153229 0.69 0.999985
Target:  5'- uGGCcUGCUCA-----GCGCAGUUCGc -3'
miRNA:   3'- cCUGaACGAGUuuaagUGCGUUAAGC- -5'
24658 5' -43.7 NC_005264.1 + 104474 0.71 0.999648
Target:  5'- gGGACUUGg-CAAGUUCGCGCu----- -3'
miRNA:   3'- -CCUGAACgaGUUUAAGUGCGuuaagc -5'
24658 5' -43.7 NC_005264.1 + 66517 0.72 0.9993
Target:  5'- cGACgaGCUCGcuUUCGCGCAGUa-- -3'
miRNA:   3'- cCUGaaCGAGUuuAAGUGCGUUAagc -5'
24658 5' -43.7 NC_005264.1 + 158075 0.75 0.992612
Target:  5'- cGGACUgGC-CGAGUUCGCGCGg--CGg -3'
miRNA:   3'- -CCUGAaCGaGUUUAAGUGCGUuaaGC- -5'
24658 5' -43.7 NC_005264.1 + 39048 0.75 0.992612
Target:  5'- cGGACUgGC-CGAGUUCGCGCGg--CGg -3'
miRNA:   3'- -CCUGAaCGaGUUUAAGUGCGUuaaGC- -5'
24658 5' -43.7 NC_005264.1 + 11656 0.77 0.981198
Target:  5'- aGGGC-UGCugUCGucgUCGCGCAAUUCGa -3'
miRNA:   3'- -CCUGaACG--AGUuuaAGUGCGUUAAGC- -5'
24658 5' -43.7 NC_005264.1 + 95395 1.13 0.033288
Target:  5'- gGGACUUGCUCAAAUUCACGCAAUUCGc -3'
miRNA:   3'- -CCUGAACGAGUUUAAGUGCGUUAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.