miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24659 3' -48.8 NC_005264.1 + 46589 0.66 0.999439
Target:  5'- gGUAACGgaugucacggcGGAGCUcccGGcACCGUcgugggACCGCg -3'
miRNA:   3'- -CAUUGCa----------UCUCGA---UCuUGGCA------UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 122452 0.66 0.999439
Target:  5'- -gGACGUAGGGCcgcgcCCGcGCUGCu -3'
miRNA:   3'- caUUGCAUCUCGaucuuGGCaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 3425 0.66 0.999439
Target:  5'- -gGACGUAGGGCcgcgcCCGcGCUGCu -3'
miRNA:   3'- caUUGCAUCUCGaucuuGGCaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 95156 0.66 0.999362
Target:  5'- -gGGCGcAGAGCUauucugccccugcaaGGuGCCGUGCCa- -3'
miRNA:   3'- caUUGCaUCUCGA---------------UCuUGGCAUGGcg -5'
24659 3' -48.8 NC_005264.1 + 70951 0.66 0.999305
Target:  5'- --uACGUGGAGCUGccuGGGCUGU--CGCu -3'
miRNA:   3'- cauUGCAUCUCGAU---CUUGGCAugGCG- -5'
24659 3' -48.8 NC_005264.1 + 96280 0.66 0.999305
Target:  5'- gGUGGCGgcGGAGCUuguGGAaaucGCCGacgcCCGCa -3'
miRNA:   3'- -CAUUGCa-UCUCGA---UCU----UGGCau--GGCG- -5'
24659 3' -48.8 NC_005264.1 + 13300 0.66 0.999144
Target:  5'- ---uCGUGGAGCUccccggAGGACg--GCCGCg -3'
miRNA:   3'- cauuGCAUCUCGA------UCUUGgcaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 40569 0.66 0.999144
Target:  5'- -gAGCGacagcaAGAGCU-GAACCGgcaGCUGCu -3'
miRNA:   3'- caUUGCa-----UCUCGAuCUUGGCa--UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 67874 0.66 0.999144
Target:  5'- -aGGCGUAGAG--GGAAUgG-GCCGCg -3'
miRNA:   3'- caUUGCAUCUCgaUCUUGgCaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 159596 0.66 0.999144
Target:  5'- -gAGCGacagcaAGAGCU-GAACCGgcaGCUGCu -3'
miRNA:   3'- caUUGCa-----UCUCGAuCUUGGCa--UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 102474 0.66 0.999144
Target:  5'- ----aGUGGAGCUgcguuuAGGGCUGUAUcaCGCa -3'
miRNA:   3'- cauugCAUCUCGA------UCUUGGCAUG--GCG- -5'
24659 3' -48.8 NC_005264.1 + 132327 0.66 0.999144
Target:  5'- ---uCGUGGAGCUccccggAGGACg--GCCGCg -3'
miRNA:   3'- cauuGCAUCUCGA------UCUUGgcaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 91003 0.66 0.998953
Target:  5'- -gAACGgauGGGCUacggAGGACCcaugcUGCCGCg -3'
miRNA:   3'- caUUGCau-CUCGA----UCUUGGc----AUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 53785 0.66 0.998953
Target:  5'- --uGCGUugugGGAGCgGGAGCUGcuCCGCg -3'
miRNA:   3'- cauUGCA----UCUCGaUCUUGGCauGGCG- -5'
24659 3' -48.8 NC_005264.1 + 101445 0.66 0.998953
Target:  5'- -aAGCGgcgaaGGAGCgccUGGAACgGggagACCGCg -3'
miRNA:   3'- caUUGCa----UCUCG---AUCUUGgCa---UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 110113 0.67 0.998726
Target:  5'- -gAACGacaGGGGCcgAGAGCC--GCCGCg -3'
miRNA:   3'- caUUGCa--UCUCGa-UCUUGGcaUGGCG- -5'
24659 3' -48.8 NC_005264.1 + 56991 0.67 0.998726
Target:  5'- -cGGCGaacAGGGCcaugcacgAGAACCGUuCCGCc -3'
miRNA:   3'- caUUGCa--UCUCGa-------UCUUGGCAuGGCG- -5'
24659 3' -48.8 NC_005264.1 + 106575 0.67 0.998726
Target:  5'- -aGGCgGUGGAGC-AG-ACCGcaaACCGCa -3'
miRNA:   3'- caUUG-CAUCUCGaUCuUGGCa--UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 77711 0.67 0.998458
Target:  5'- -cGGCGcaGGAGUUccaAGAACCGgaggACUGCg -3'
miRNA:   3'- caUUGCa-UCUCGA---UCUUGGCa---UGGCG- -5'
24659 3' -48.8 NC_005264.1 + 44651 0.67 0.998429
Target:  5'- cUGAUGUAGaAGCU---GCCGUugguucccccgugGCCGCa -3'
miRNA:   3'- cAUUGCAUC-UCGAucuUGGCA-------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.