Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24660 | 3' | -54.1 | NC_005264.1 | + | 53914 | 0.68 | 0.876937 |
Target: 5'- cAUCCcuUAGUGAGCUcuacacgaacuuccGCGuuagaCCGCGCGCa -3' miRNA: 3'- -UAGG--AUCAUUUGA--------------CGCug---GGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 95953 | 0.68 | 0.871743 |
Target: 5'- gGUCCgggauaUGGUGucgcGGCUGCucUCCGCGCGCg -3' miRNA: 3'- -UAGG------AUCAU----UUGACGcuGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 158009 | 0.68 | 0.871743 |
Target: 5'- -cCCUAG-AAACaGaGGCCCGCGUGCa -3' miRNA: 3'- uaGGAUCaUUUGaCgCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 154124 | 0.68 | 0.864133 |
Target: 5'- -gCCg---AAACgGCGGCCaCGCGCGCg -3' miRNA: 3'- uaGGaucaUUUGaCGCUGG-GCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 67014 | 0.69 | 0.848263 |
Target: 5'- -gCCUGGacgGAGCgGCGGCCUuGCGCAg -3' miRNA: 3'- uaGGAUCa--UUUGaCGCUGGG-CGCGUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 76966 | 0.69 | 0.822937 |
Target: 5'- uUCCUGuUAGACuuuuugUGCGACCCaccgaagaaguGCGCGCa -3' miRNA: 3'- uAGGAUcAUUUG------ACGCUGGG-----------CGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 150116 | 0.7 | 0.805132 |
Target: 5'- cGUCCaguUGGgcgGAGCaUGUcagagGGCCCGCGCACg -3' miRNA: 3'- -UAGG---AUCa--UUUG-ACG-----CUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 112989 | 0.7 | 0.795979 |
Target: 5'- cUCCgccAGaAGGCUGCGgcguacguGCUCGCGCACa -3' miRNA: 3'- uAGGa--UCaUUUGACGC--------UGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 116451 | 0.7 | 0.795979 |
Target: 5'- -aCCUGGcc--CUGaCGACCCGCGUAUc -3' miRNA: 3'- uaGGAUCauuuGAC-GCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 123028 | 0.71 | 0.757912 |
Target: 5'- -aUCUAGgcGGaUGCGugCCGCGCAUc -3' miRNA: 3'- uaGGAUCauUUgACGCugGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 45497 | 0.72 | 0.697519 |
Target: 5'- cGUCCUuuGGUugcaaAGAaggGaCGACCCGCGCACg -3' miRNA: 3'- -UAGGA--UCA-----UUUga-C-GCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 109552 | 0.72 | 0.666414 |
Target: 5'- cAUCCUGGcaaccAAACUGCGGCgCCGCGgGa -3' miRNA: 3'- -UAGGAUCa----UUUGACGCUG-GGCGCgUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 154517 | 0.73 | 0.614108 |
Target: 5'- -cCCUAGggGACgacgGCGACgCCGCgGCGCa -3' miRNA: 3'- uaGGAUCauUUGa---CGCUG-GGCG-CGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 35490 | 0.73 | 0.614108 |
Target: 5'- -cCCUAGggGACgacgGCGACgCCGCgGCGCa -3' miRNA: 3'- uaGGAUCauUUGa---CGCUG-GGCG-CGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 111028 | 0.74 | 0.582826 |
Target: 5'- cUCCUGGUucgAAGCgGUGGCUCGCGCGg -3' miRNA: 3'- uAGGAUCA---UUUGaCGCUGGGCGCGUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 97976 | 1.07 | 0.005492 |
Target: 5'- cAUCCUAGUAAACUGCGACCCGCGCACc -3' miRNA: 3'- -UAGGAUCAUUUGACGCUGGGCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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