miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24660 3' -54.1 NC_005264.1 + 3148 0.68 0.886283
Target:  5'- cGUCCUGGcggcaaccgAAACgGCGACCCuccGCGuCGCg -3'
miRNA:   3'- -UAGGAUCa--------UUUGaCGCUGGG---CGC-GUG- -5'
24660 3' -54.1 NC_005264.1 + 31819 0.67 0.929593
Target:  5'- gGUCgUGacgcGUAcuCUGcCGugCCGCGCGCg -3'
miRNA:   3'- -UAGgAU----CAUuuGAC-GCugGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 35490 0.73 0.614108
Target:  5'- -cCCUAGggGACgacgGCGACgCCGCgGCGCa -3'
miRNA:   3'- uaGGAUCauUUGa---CGCUG-GGCG-CGUG- -5'
24660 3' -54.1 NC_005264.1 + 38792 0.67 0.912512
Target:  5'- cGUCCcGGUGAcguacuccGCgGCGACCCcgGCGCGg -3'
miRNA:   3'- -UAGGaUCAUU--------UGaCGCUGGG--CGCGUg -5'
24660 3' -54.1 NC_005264.1 + 43712 0.66 0.948875
Target:  5'- ----aAGgAAACUcgaGCGGCCCGCGUGCg -3'
miRNA:   3'- uaggaUCaUUUGA---CGCUGGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 45497 0.72 0.697519
Target:  5'- cGUCCUuuGGUugcaaAGAaggGaCGACCCGCGCACg -3'
miRNA:   3'- -UAGGA--UCA-----UUUga-C-GCUGGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 53914 0.68 0.876937
Target:  5'- cAUCCcuUAGUGAGCUcuacacgaacuuccGCGuuagaCCGCGCGCa -3'
miRNA:   3'- -UAGG--AUCAUUUGA--------------CGCug---GGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 59317 0.66 0.93973
Target:  5'- uAUCCgcucgAGUcucuCUGCGuucuCCCGCGUGCc -3'
miRNA:   3'- -UAGGa----UCAuuu-GACGCu---GGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 65501 0.67 0.924149
Target:  5'- cGUCCgauacggAGUGAucgGCGACCUGCuugGCACc -3'
miRNA:   3'- -UAGGa------UCAUUugaCGCUGGGCG---CGUG- -5'
24660 3' -54.1 NC_005264.1 + 67014 0.69 0.848263
Target:  5'- -gCCUGGacgGAGCgGCGGCCUuGCGCAg -3'
miRNA:   3'- uaGGAUCa--UUUGaCGCUGGG-CGCGUg -5'
24660 3' -54.1 NC_005264.1 + 67162 0.67 0.924149
Target:  5'- -cCCUgugacgaaggGGUGGAUgGCGGCCUGCaGCGCu -3'
miRNA:   3'- uaGGA----------UCAUUUGaCGCUGGGCG-CGUG- -5'
24660 3' -54.1 NC_005264.1 + 69137 0.67 0.912512
Target:  5'- -gCCUGau---CUGUGGCCCGCGCuACu -3'
miRNA:   3'- uaGGAUcauuuGACGCUGGGCGCG-UG- -5'
24660 3' -54.1 NC_005264.1 + 76966 0.69 0.822937
Target:  5'- uUCCUGuUAGACuuuuugUGCGACCCaccgaagaaguGCGCGCa -3'
miRNA:   3'- uAGGAUcAUUUG------ACGCUGGG-----------CGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 95079 0.67 0.924149
Target:  5'- -cCCaAGccacgcAACUGCGACCUGCGC-Cg -3'
miRNA:   3'- uaGGaUCau----UUGACGCUGGGCGCGuG- -5'
24660 3' -54.1 NC_005264.1 + 95953 0.68 0.871743
Target:  5'- gGUCCgggauaUGGUGucgcGGCUGCucUCCGCGCGCg -3'
miRNA:   3'- -UAGG------AUCAU----UUGACGcuGGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 97976 1.07 0.005492
Target:  5'- cAUCCUAGUAAACUGCGACCCGCGCACc -3'
miRNA:   3'- -UAGGAUCAUUUGACGCUGGGCGCGUG- -5'
24660 3' -54.1 NC_005264.1 + 99255 0.66 0.946235
Target:  5'- aGUCCgaaacgaaacaacaAGUGGGCUGCGACCUauggaagguauuGCGC-Ca -3'
miRNA:   3'- -UAGGa-------------UCAUUUGACGCUGGG------------CGCGuG- -5'
24660 3' -54.1 NC_005264.1 + 104140 0.66 0.946235
Target:  5'- -gCCUAGUAAAC-GCGGCCgucauagaggccgggUGCGCcuGCa -3'
miRNA:   3'- uaGGAUCAUUUGaCGCUGG---------------GCGCG--UG- -5'
24660 3' -54.1 NC_005264.1 + 109552 0.72 0.666414
Target:  5'- cAUCCUGGcaaccAAACUGCGGCgCCGCGgGa -3'
miRNA:   3'- -UAGGAUCa----UUUGACGCUG-GGCGCgUg -5'
24660 3' -54.1 NC_005264.1 + 111028 0.74 0.582826
Target:  5'- cUCCUGGUucgAAGCgGUGGCUCGCGCGg -3'
miRNA:   3'- uAGGAUCA---UUUGaCGCUGGGCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.