Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24660 | 3' | -54.1 | NC_005264.1 | + | 154517 | 0.73 | 0.614108 |
Target: 5'- -cCCUAGggGACgacgGCGACgCCGCgGCGCa -3' miRNA: 3'- uaGGAUCauUUGa---CGCUG-GGCG-CGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 97976 | 1.07 | 0.005492 |
Target: 5'- cAUCCUAGUAAACUGCGACCCGCGCACc -3' miRNA: 3'- -UAGGAUCAUUUGACGCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 95079 | 0.67 | 0.924149 |
Target: 5'- -cCCaAGccacgcAACUGCGACCUGCGC-Cg -3' miRNA: 3'- uaGGaUCau----UUGACGCUGGGCGCGuG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 143679 | 0.67 | 0.924149 |
Target: 5'- cAUCCUGGU----UGUGAUgUGCGCGCc -3' miRNA: 3'- -UAGGAUCAuuugACGCUGgGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 157818 | 0.67 | 0.912512 |
Target: 5'- cGUCCcGGUGAcguacuccGCgGCGACCCcgGCGCGg -3' miRNA: 3'- -UAGGaUCAUU--------UGaCGCUGGG--CGCGUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 122175 | 0.68 | 0.886283 |
Target: 5'- cGUCCUGGcggcaaccgAAACgGCGACCCuccGCGuCGCg -3' miRNA: 3'- -UAGGAUCa--------UUUGaCGCUGGG---CGC-GUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 161657 | 0.66 | 0.953082 |
Target: 5'- -gCCcGGUccGCUGCGuACCCcaucGCGCGCc -3' miRNA: 3'- uaGGaUCAuuUGACGC-UGGG----CGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 99255 | 0.66 | 0.946235 |
Target: 5'- aGUCCgaaacgaaacaacaAGUGGGCUGCGACCUauggaagguauuGCGC-Ca -3' miRNA: 3'- -UAGGa-------------UCAUUUGACGCUGGG------------CGCGuG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 59317 | 0.66 | 0.93973 |
Target: 5'- uAUCCgcucgAGUcucuCUGCGuucuCCCGCGUGCc -3' miRNA: 3'- -UAGGa----UCAuuu-GACGCu---GGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 67162 | 0.67 | 0.924149 |
Target: 5'- -cCCUgugacgaaggGGUGGAUgGCGGCCUGCaGCGCu -3' miRNA: 3'- uaGGA----------UCAUUUGaCGCUGGGCG-CGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 76966 | 0.69 | 0.822937 |
Target: 5'- uUCCUGuUAGACuuuuugUGCGACCCaccgaagaaguGCGCGCa -3' miRNA: 3'- uAGGAUcAUUUG------ACGCUGGG-----------CGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 104140 | 0.66 | 0.946235 |
Target: 5'- -gCCUAGUAAAC-GCGGCCgucauagaggccgggUGCGCcuGCa -3' miRNA: 3'- uaGGAUCAUUUGaCGCUGG---------------GCGCG--UG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 67014 | 0.69 | 0.848263 |
Target: 5'- -gCCUGGacgGAGCgGCGGCCUuGCGCAg -3' miRNA: 3'- uaGGAUCa--UUUGaCGCUGGG-CGCGUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 150845 | 0.67 | 0.929593 |
Target: 5'- gGUCgUGacgcGUAcuCUGcCGugCCGCGCGCg -3' miRNA: 3'- -UAGgAU----CAUuuGAC-GCugGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 162738 | 0.66 | 0.948875 |
Target: 5'- ----aAGgAAACUcgaGCGGCCCGCGUGCg -3' miRNA: 3'- uaggaUCaUUUGA---CGCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 53914 | 0.68 | 0.876937 |
Target: 5'- cAUCCcuUAGUGAGCUcuacacgaacuuccGCGuuagaCCGCGCGCa -3' miRNA: 3'- -UAGG--AUCAUUUGA--------------CGCug---GGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 111028 | 0.74 | 0.582826 |
Target: 5'- cUCCUGGUucgAAGCgGUGGCUCGCGCGg -3' miRNA: 3'- uAGGAUCA---UUUGaCGCUGGGCGCGUg -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 112989 | 0.7 | 0.795979 |
Target: 5'- cUCCgccAGaAGGCUGCGgcguacguGCUCGCGCACa -3' miRNA: 3'- uAGGa--UCaUUUGACGC--------UGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 116451 | 0.7 | 0.795979 |
Target: 5'- -aCCUGGcc--CUGaCGACCCGCGUAUc -3' miRNA: 3'- uaGGAUCauuuGAC-GCUGGGCGCGUG- -5' |
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24660 | 3' | -54.1 | NC_005264.1 | + | 150116 | 0.7 | 0.805132 |
Target: 5'- cGUCCaguUGGgcgGAGCaUGUcagagGGCCCGCGCACg -3' miRNA: 3'- -UAGG---AUCa--UUUG-ACG-----CUGGGCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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