miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24660 5' -54.8 NC_005264.1 + 147148 0.66 0.944148
Target:  5'- aCGGUAaaacuCGcCAUGGcggaagucGCUGGCCGcCUUCu -3'
miRNA:   3'- -GUCAU-----GC-GUACCa-------CGACCGGCuGAAG- -5'
24660 5' -54.8 NC_005264.1 + 79911 0.66 0.93948
Target:  5'- -cGUGCGCGUGGccgacgucUGC-GGCgGACUcCa -3'
miRNA:   3'- guCAUGCGUACC--------ACGaCCGgCUGAaG- -5'
24660 5' -54.8 NC_005264.1 + 21157 0.66 0.938999
Target:  5'- cCAGUGCugaauccagaGUGUGGUuugauaccuacguGCUGGCCGGCc-- -3'
miRNA:   3'- -GUCAUG----------CGUACCA-------------CGACCGGCUGaag -5'
24660 5' -54.8 NC_005264.1 + 60892 0.66 0.924005
Target:  5'- -cGUACGCcgcGGUGg-GGCCGACg-- -3'
miRNA:   3'- guCAUGCGua-CCACgaCCGGCUGaag -5'
24660 5' -54.8 NC_005264.1 + 86224 0.66 0.918355
Target:  5'- -cGUGCuCGUGG-GC-GGCCGAgUUCg -3'
miRNA:   3'- guCAUGcGUACCaCGaCCGGCUgAAG- -5'
24660 5' -54.8 NC_005264.1 + 84944 0.66 0.917777
Target:  5'- gUAGUgugGCGCcgGGUGCUcgcuugcGGCCaGGCUg- -3'
miRNA:   3'- -GUCA---UGCGuaCCACGA-------CCGG-CUGAag -5'
24660 5' -54.8 NC_005264.1 + 59841 0.67 0.886467
Target:  5'- cCAGcGCGCAauacgUGGUGCaGGCCGccACggUCa -3'
miRNA:   3'- -GUCaUGCGU-----ACCACGaCCGGC--UGa-AG- -5'
24660 5' -54.8 NC_005264.1 + 117853 0.67 0.886467
Target:  5'- gAGUGCGCAUGcaagGCaUGGCgGACa-- -3'
miRNA:   3'- gUCAUGCGUACca--CG-ACCGgCUGaag -5'
24660 5' -54.8 NC_005264.1 + 133696 0.7 0.787892
Target:  5'- gCGGUccuugccgccGCGCAcUGGUGCugccucUGGCCGACa-- -3'
miRNA:   3'- -GUCA----------UGCGU-ACCACG------ACCGGCUGaag -5'
24660 5' -54.8 NC_005264.1 + 13551 0.7 0.787892
Target:  5'- cCAGUGCGCcaaccUGGUuaagcgacucucGCUGGCaaagGGCUUCg -3'
miRNA:   3'- -GUCAUGCGu----ACCA------------CGACCGg---CUGAAG- -5'
24660 5' -54.8 NC_005264.1 + 88092 0.7 0.759438
Target:  5'- gCAGUGCGCGUcGGgcacaGCgucGGCCGGCg-- -3'
miRNA:   3'- -GUCAUGCGUA-CCa----CGa--CCGGCUGaag -5'
24660 5' -54.8 NC_005264.1 + 14756 0.7 0.749709
Target:  5'- gUAGUGCGgAUGGUGgaGGgCGACc-- -3'
miRNA:   3'- -GUCAUGCgUACCACgaCCgGCUGaag -5'
24660 5' -54.8 NC_005264.1 + 135877 0.71 0.699661
Target:  5'- uCAG-ACGCAUGG-GCcucccGGCgGACUUCg -3'
miRNA:   3'- -GUCaUGCGUACCaCGa----CCGgCUGAAG- -5'
24660 5' -54.8 NC_005264.1 + 804 0.76 0.429603
Target:  5'- cCAGUACGgcugGGUGCgcGGCCGGCUUUa -3'
miRNA:   3'- -GUCAUGCgua-CCACGa-CCGGCUGAAG- -5'
24660 5' -54.8 NC_005264.1 + 98010 1.1 0.002944
Target:  5'- cCAGUACGCAUGGUGCUGGCCGACUUCa -3'
miRNA:   3'- -GUCAUGCGUACCACGACCGGCUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.