Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24661 | 3' | -52.1 | NC_005264.1 | + | 98373 | 1.07 | 0.009148 |
Target: 5'- gACGAGCCCAUGGACCAUAAGACGAUAc -3' miRNA: 3'- -UGCUCGGGUACCUGGUAUUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 123057 | 0.72 | 0.811592 |
Target: 5'- gGCGGGCCgAUGcAUCAgGAGACGAUGg -3' miRNA: 3'- -UGCUCGGgUACcUGGUaUUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 4030 | 0.72 | 0.811592 |
Target: 5'- gGCGGGCCgAUGcAUCAgGAGACGAUGg -3' miRNA: 3'- -UGCUCGGgUACcUGGUaUUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 134155 | 0.71 | 0.829309 |
Target: 5'- cGCGAGCCaaagGUGGGCCGUucGuCGAUc -3' miRNA: 3'- -UGCUCGGg---UACCUGGUAuuCuGCUAu -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 26149 | 0.71 | 0.85443 |
Target: 5'- gGCGAGCCCAacgGGACCAcacccuCGGUGc -3' miRNA: 3'- -UGCUCGGGUa--CCUGGUauucu-GCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 96046 | 0.71 | 0.86782 |
Target: 5'- cGCuGGCCCAggcgGGACCGUGuuaggaacgugggaGGACGAg- -3' miRNA: 3'- -UGcUCGGGUa---CCUGGUAU--------------UCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 70441 | 0.7 | 0.87762 |
Target: 5'- cGCGuGCCUcuucuUGGACCu--GGACGAUAc -3' miRNA: 3'- -UGCuCGGGu----ACCUGGuauUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 27121 | 0.7 | 0.884174 |
Target: 5'- -gGGGCCCAauggaagUGGGCCAUGAGccCGAg- -3' miRNA: 3'- ugCUCGGGU-------ACCUGGUAUUCu-GCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 122848 | 0.7 | 0.884891 |
Target: 5'- uCGGGCCCGggcgGGGCCGcAGGAgGAa- -3' miRNA: 3'- uGCUCGGGUa---CCUGGUaUUCUgCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 3822 | 0.7 | 0.884891 |
Target: 5'- uCGGGCCCGggcgGGGCCGcAGGAgGAa- -3' miRNA: 3'- uGCUCGGGUa---CCUGGUaUUCUgCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 36142 | 0.69 | 0.915798 |
Target: 5'- gACGAGCCCAUGGagGCCGaGcccuccgagccggcAGGCGGc- -3' miRNA: 3'- -UGCUCGGGUACC--UGGUaU--------------UCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 155169 | 0.69 | 0.915798 |
Target: 5'- gACGAGCCCAUGGagGCCGaGcccuccgagccggcAGGCGGc- -3' miRNA: 3'- -UGCUCGGGUACC--UGGUaU--------------UCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 43880 | 0.69 | 0.917583 |
Target: 5'- aACGAGCgCGgcaaaggGGGCgCcgGAGACGAUAg -3' miRNA: 3'- -UGCUCGgGUa------CCUG-GuaUUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 38334 | 0.69 | 0.928898 |
Target: 5'- gGCGGGCCC-UGG-CCGUGaugcuGGGCGGc- -3' miRNA: 3'- -UGCUCGGGuACCuGGUAU-----UCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 157361 | 0.69 | 0.928898 |
Target: 5'- gGCGGGCCC-UGG-CCGUGaugcuGGGCGGc- -3' miRNA: 3'- -UGCUCGGGuACCuGGUAU-----UCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 118807 | 0.69 | 0.933657 |
Target: 5'- aGCGGccucuacGCCCAacggcUGGACgCAUGAGGCGGc- -3' miRNA: 3'- -UGCU-------CGGGU-----ACCUG-GUAUUCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 115880 | 0.68 | 0.939681 |
Target: 5'- uCGAGCCCGccacccgggGGGCCAgugagcaacgccaagGAGACGAg- -3' miRNA: 3'- uGCUCGGGUa--------CCUGGUa--------------UUCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 91433 | 0.68 | 0.94396 |
Target: 5'- aACuGGUCCAUGGcCCuaGAGGCGAUGa -3' miRNA: 3'- -UGcUCGGGUACCuGGuaUUCUGCUAU- -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 132017 | 0.68 | 0.948476 |
Target: 5'- cGCGAGCCCGUucGAgCAcGAGGCGGa- -3' miRNA: 3'- -UGCUCGGGUAc-CUgGUaUUCUGCUau -5' |
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24661 | 3' | -52.1 | NC_005264.1 | + | 12990 | 0.68 | 0.948476 |
Target: 5'- cGCGAGCCCGUucGAgCAcGAGGCGGa- -3' miRNA: 3'- -UGCUCGGGUAc-CUgGUaUUCUGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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