miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24661 3' -52.1 NC_005264.1 + 27121 0.7 0.884174
Target:  5'- -gGGGCCCAauggaagUGGGCCAUGAGccCGAg- -3'
miRNA:   3'- ugCUCGGGU-------ACCUGGUAUUCu-GCUau -5'
24661 3' -52.1 NC_005264.1 + 26149 0.71 0.85443
Target:  5'- gGCGAGCCCAacgGGACCAcacccuCGGUGc -3'
miRNA:   3'- -UGCUCGGGUa--CCUGGUauucu-GCUAU- -5'
24661 3' -52.1 NC_005264.1 + 134155 0.71 0.829309
Target:  5'- cGCGAGCCaaagGUGGGCCGUucGuCGAUc -3'
miRNA:   3'- -UGCUCGGg---UACCUGGUAuuCuGCUAu -5'
24661 3' -52.1 NC_005264.1 + 123057 0.72 0.811592
Target:  5'- gGCGGGCCgAUGcAUCAgGAGACGAUGg -3'
miRNA:   3'- -UGCUCGGgUACcUGGUaUUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 98373 1.07 0.009148
Target:  5'- gACGAGCCCAUGGACCAUAAGACGAUAc -3'
miRNA:   3'- -UGCUCGGGUACCUGGUAUUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 91433 0.68 0.94396
Target:  5'- aACuGGUCCAUGGcCCuaGAGGCGAUGa -3'
miRNA:   3'- -UGcUCGGGUACCuGGuaUUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 97058 0.66 0.984809
Target:  5'- --aAGCgCAUGGucuCCGUGAGGCGGa- -3'
miRNA:   3'- ugcUCGgGUACCu--GGUAUUCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 71558 0.66 0.977812
Target:  5'- -gGAGCUCGUgcacauccgcaucaGGACCA--AGACGGUGu -3'
miRNA:   3'- ugCUCGGGUA--------------CCUGGUauUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 130914 0.66 0.976064
Target:  5'- cCGAGCCgCGaGGGCCGUGGGAaaAUGc -3'
miRNA:   3'- uGCUCGG-GUaCCUGGUAUUCUgcUAU- -5'
24661 3' -52.1 NC_005264.1 + 132017 0.68 0.948476
Target:  5'- cGCGAGCCCGUucGAgCAcGAGGCGGa- -3'
miRNA:   3'- -UGCUCGGGUAc-CUgGUaUUCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 122848 0.7 0.884891
Target:  5'- uCGGGCCCGggcgGGGCCGcAGGAgGAa- -3'
miRNA:   3'- uGCUCGGGUa---CCUGGUaUUCUgCUau -5'
24661 3' -52.1 NC_005264.1 + 36305 0.66 0.982896
Target:  5'- -aGAGCCCGUaGAC---GAGGCGAUGg -3'
miRNA:   3'- ugCUCGGGUAcCUGguaUUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 155169 0.69 0.915798
Target:  5'- gACGAGCCCAUGGagGCCGaGcccuccgagccggcAGGCGGc- -3'
miRNA:   3'- -UGCUCGGGUACC--UGGUaU--------------UCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 128076 0.67 0.967419
Target:  5'- cACGAGCCUAgcguugaGGACCcgacgcgcugAGGACGAg- -3'
miRNA:   3'- -UGCUCGGGUa------CCUGGua--------UUCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 97131 0.66 0.982896
Target:  5'- cUGAGCUCAaGGGCUAc-AGGCGGUAu -3'
miRNA:   3'- uGCUCGGGUaCCUGGUauUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 157361 0.69 0.928898
Target:  5'- gGCGGGCCC-UGG-CCGUGaugcuGGGCGGc- -3'
miRNA:   3'- -UGCUCGGGuACCuGGUAU-----UCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 70441 0.7 0.87762
Target:  5'- cGCGuGCCUcuucuUGGACCu--GGACGAUAc -3'
miRNA:   3'- -UGCuCGGGu----ACCUGGuauUCUGCUAU- -5'
24661 3' -52.1 NC_005264.1 + 96046 0.71 0.86782
Target:  5'- cGCuGGCCCAggcgGGACCGUGuuaggaacgugggaGGACGAg- -3'
miRNA:   3'- -UGcUCGGGUa---CCUGGUAU--------------UCUGCUau -5'
24661 3' -52.1 NC_005264.1 + 3822 0.7 0.884891
Target:  5'- uCGGGCCCGggcgGGGCCGcAGGAgGAa- -3'
miRNA:   3'- uGCUCGGGUa---CCUGGUaUUCUgCUau -5'
24661 3' -52.1 NC_005264.1 + 36142 0.69 0.915798
Target:  5'- gACGAGCCCAUGGagGCCGaGcccuccgagccggcAGGCGGc- -3'
miRNA:   3'- -UGCUCGGGUACC--UGGUaU--------------UCUGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.