miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24661 5' -52.1 NC_005264.1 + 82634 0.66 0.983956
Target:  5'- -aUAUgCGCgUGGCGUUUGCGuGGCc-- -3'
miRNA:   3'- gaAUA-GCGgACCGCGAAUGC-CUGaua -5'
24661 5' -52.1 NC_005264.1 + 127645 0.66 0.983956
Target:  5'- --aGUCuCC-GGCGCUagACGGGCUGg -3'
miRNA:   3'- gaaUAGcGGaCCGCGAa-UGCCUGAUa -5'
24661 5' -52.1 NC_005264.1 + 231 0.66 0.97978
Target:  5'- gCUUuccgUGCCUGGCGCcacagcgagGCGGGCc-- -3'
miRNA:   3'- -GAAua--GCGGACCGCGaa-------UGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 119258 0.66 0.97978
Target:  5'- gCUUuccgUGCCUGGCGCcacagcgagGCGGGCc-- -3'
miRNA:   3'- -GAAua--GCGGACCGCGaa-------UGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 20285 0.66 0.977411
Target:  5'- ----cCGUCUGcGCGCUUGCGGccccgagggGCUGa -3'
miRNA:   3'- gaauaGCGGAC-CGCGAAUGCC---------UGAUa -5'
24661 5' -52.1 NC_005264.1 + 51098 0.66 0.974845
Target:  5'- --gGUCGCC-GGUGCU-GCGGuCUGc -3'
miRNA:   3'- gaaUAGCGGaCCGCGAaUGCCuGAUa -5'
24661 5' -52.1 NC_005264.1 + 123665 0.67 0.969086
Target:  5'- --aAUCGCCgGGcCGCUUcuCGGACa-- -3'
miRNA:   3'- gaaUAGCGGaCC-GCGAAu-GCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 4638 0.67 0.969086
Target:  5'- --aAUCGCCgGGcCGCUUcuCGGACa-- -3'
miRNA:   3'- gaaUAGCGGaCC-GCGAAu-GCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 121123 0.67 0.968147
Target:  5'- ----cCGCCUGGCGCgagaagauguagaGGGCUAc -3'
miRNA:   3'- gaauaGCGGACCGCGaaug---------CCUGAUa -5'
24661 5' -52.1 NC_005264.1 + 25111 0.67 0.965878
Target:  5'- ---uUC-CCUGGUagGCUUGCGGGCUc- -3'
miRNA:   3'- gaauAGcGGACCG--CGAAUGCCUGAua -5'
24661 5' -52.1 NC_005264.1 + 40355 0.67 0.965545
Target:  5'- --cAUCGCCcccgagacccucgUGGCGCUUugcgagcagcGCGGGCg-- -3'
miRNA:   3'- gaaUAGCGG-------------ACCGCGAA----------UGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 159382 0.67 0.965545
Target:  5'- --cAUCGCCcccgagacccucgUGGCGCUUugcgagcagcGCGGGCg-- -3'
miRNA:   3'- gaaUAGCGG-------------ACCGCGAA----------UGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 116277 0.68 0.946323
Target:  5'- aCUUGgaaGCCgUGGCGCggGCGG-CUAc -3'
miRNA:   3'- -GAAUag-CGG-ACCGCGaaUGCCuGAUa -5'
24661 5' -52.1 NC_005264.1 + 25461 0.68 0.946323
Target:  5'- gCUUGUCGCCgacgugggGGCGCcaggcgUACGGGa--- -3'
miRNA:   3'- -GAAUAGCGGa-------CCGCGa-----AUGCCUgaua -5'
24661 5' -52.1 NC_005264.1 + 18136 0.68 0.936774
Target:  5'- gCUUGcUGUCUGGCGCgaGCGG-CUAa -3'
miRNA:   3'- -GAAUaGCGGACCGCGaaUGCCuGAUa -5'
24661 5' -52.1 NC_005264.1 + 88112 0.69 0.931618
Target:  5'- --cGUCgGCC-GGCGCgguugcgUACGGGCUGa -3'
miRNA:   3'- gaaUAG-CGGaCCGCGa------AUGCCUGAUa -5'
24661 5' -52.1 NC_005264.1 + 3757 0.7 0.888395
Target:  5'- uCUUGcCGCCggGGCGCU-GCGGGCc-- -3'
miRNA:   3'- -GAAUaGCGGa-CCGCGAaUGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 122783 0.7 0.888395
Target:  5'- uCUUGcCGCCggGGCGCU-GCGGGCc-- -3'
miRNA:   3'- -GAAUaGCGGa-CCGCGAaUGCCUGaua -5'
24661 5' -52.1 NC_005264.1 + 137427 0.72 0.806796
Target:  5'- -gUAUCGCCUGGCGC--ACGaGAUa-- -3'
miRNA:   3'- gaAUAGCGGACCGCGaaUGC-CUGaua -5'
24661 5' -52.1 NC_005264.1 + 32994 0.74 0.68763
Target:  5'- -aUAUCGCCaucgGGCGCUgguCGGAUUGc -3'
miRNA:   3'- gaAUAGCGGa---CCGCGAau-GCCUGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.